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Update README.md
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tarachari3 authored Jun 27, 2023
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Expand Up @@ -17,11 +17,11 @@ All saved/processed data used for analysis is streamed to the notebooks from [Ca
[Github for MCML Package](https://github.com/pachterlab/MCML): Package for running the MCML algorithm and quantitative analysis on embeddings/matrices.


## Notebooks Directory Contents
## Repo Directory Contents

1) **notebooks**
All analysis notebooks from which Figures were generated.
Notebook directories listed below for the corresponding Figures.
Notebook sub-directories listed below for the corresponding Figures.

* Figure 2: `jaccardDistort_Fig2a`, `combinedFigurePlots_Figs2a_4a_7`, `cellRankAnalysis_Figs2b_4b`, `equidAnalysis_Fig2c`
* Figure 3: `uteroMixingAnalysis_Fig3a`, `scanoCompMixingAnalysis_Fig3b`
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