Merge pull request #1957 from PatrickWaweru/createDuplicateNUPIreport

Added NUPI Duplicates report
palladiumkenya · Jul 22, 2024 · b453451 · b453451
2 parents 1bd5994 + 9837b3c
commit b453451
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diff --git a/...n/java/org/openmrs/module/kenyaemr/calculation/library/nupi/DuplicateNUPICalculation.java b/...n/java/org/openmrs/module/kenyaemr/calculation/library/nupi/DuplicateNUPICalculation.java
@@ -0,0 +1,67 @@
+/**
+ * This Source Code Form is subject to the terms of the Mozilla Public License,
+ * v. 2.0. If a copy of the MPL was not distributed with this file, You can
+ * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under
+ * the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+ *
+ * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS
+ * graphic logo is a trademark of OpenMRS Inc.
+ */
+
+package org.openmrs.module.kenyaemr.calculation.library.nupi;
+
+import java.util.Collection;
+import java.util.Map;
+
+import org.openmrs.Patient;
+import org.openmrs.PersonAttributeType;
+import org.openmrs.api.PatientService;
+import org.openmrs.api.context.Context;
+import org.openmrs.calculation.patient.PatientCalculationContext;
+import org.openmrs.calculation.result.CalculationResultMap;
+import org.openmrs.module.kenyacore.calculation.AbstractPatientCalculation;
+import org.openmrs.module.kenyacore.calculation.BooleanResult;
+import org.openmrs.module.kenyaemr.metadata.CommonMetadata;
+
+/**
+ * Calculate whether a patient has high IIT risk score based on data pulled from NDWH
+ */
+public class DuplicateNUPICalculation extends AbstractPatientCalculation {
+
+	/**
+	 * @see org.openmrs.calculation.patient.PatientCalculation#evaluate(Collection, Map,
+	 *      PatientCalculationContext)
+	 * @should determine whether a patient has high IIT risk
+	 */
+	@Override
+	public CalculationResultMap evaluate(Collection<Integer> cohort, Map<String, Object> parameterValues, PatientCalculationContext context) {
+
+		PersonAttributeType duplicateStatusPA = Context.getPersonService().getPersonAttributeTypeByUuid(CommonMetadata._PersonAttributeType.DUPLICATE_NUPI_STATUS_WITH_NATIONAL_REGISTRY);
+		PatientService patientService = Context.getPatientService();
+		CalculationResultMap ret = new CalculationResultMap();
+
+		try {
+			for(Integer ptId: cohort){
+				Patient patient = patientService.getPatient(ptId);
+				try {
+					if (patient.getAttribute(duplicateStatusPA) != null) {
+						// Has a duplicate?
+						if (patient.getAttribute(duplicateStatusPA).getValue().trim().equalsIgnoreCase("true")) {
+							ret.put(patient.getId(), new BooleanResult(true, this, context));
+						}
+					}
+				} catch(Exception em) {
+					System.err.println("Duplicate NUPI Error reporting: " + em.getMessage());
+					em.printStackTrace();
+				}
+			}
+		} catch(Exception ex) {
+			System.err.println("Duplicate NUPI Error reporting: " + ex.getMessage());
+			ex.printStackTrace();
+		}
+
+		return ret;
+	}
+
+}
+
diff --git a/...n/java/org/openmrs/module/kenyaemr/reporting/builder/nupi/DuplicateNUPIReportBuilder.java b/...n/java/org/openmrs/module/kenyaemr/reporting/builder/nupi/DuplicateNUPIReportBuilder.java
@@ -0,0 +1,71 @@
+/**
+ * This Source Code Form is subject to the terms of the Mozilla Public License,
+ * v. 2.0. If a copy of the MPL was not distributed with this file, You can
+ * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under
+ * the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+ *
+ * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS
+ * graphic logo is a trademark of OpenMRS Inc.
+ */
+
+package org.openmrs.module.kenyaemr.reporting.builder.nupi;
+
+import javax.persistence.AttributeConverter;
+
+import org.openmrs.PatientIdentifierType;
+import org.openmrs.PersonAttributeType;
+import org.openmrs.api.context.Context;
+import org.openmrs.module.kenyacore.report.CohortReportDescriptor;
+import org.openmrs.module.kenyacore.report.builder.Builds;
+import org.openmrs.module.kenyacore.report.builder.CalculationReportBuilder;
+import org.openmrs.module.kenyacore.report.data.patient.definition.CalculationDataDefinition;
+import org.openmrs.module.kenyaemr.calculation.library.hiv.art.DateOfEnrollmentArtCalculation;
+import org.openmrs.module.kenyaemr.metadata.CommonMetadata;
+import org.openmrs.module.kenyaemr.metadata.HivMetadata;
+import org.openmrs.module.kenyaemr.reporting.calculation.converter.DateArtStartDateConverter;
+import org.openmrs.module.kenyaemr.reporting.data.converter.IdentifierConverter;
+import org.openmrs.module.kenyaemr.reporting.data.converter.definition.art.ETLArtStartDateDataDefinition;
+import org.openmrs.module.kenyaemr.reporting.data.converter.definition.art.ETLCurrentRegLineDataDefinition;
+import org.openmrs.module.kenyaemr.reporting.data.converter.definition.art.ETLCurrentRegimenDataDefinition;
+import org.openmrs.module.kenyaemr.reporting.data.converter.definition.art.ETLFirstRegimenDataDefinition;
+import org.openmrs.module.kenyaemr.reporting.data.converter.definition.art.ETLNextAppointmentDateDataDefinition;
+import org.openmrs.module.metadatadeploy.MetadataUtils;
+import org.openmrs.module.reporting.data.DataDefinition;
+import org.openmrs.module.reporting.data.converter.DateConverter;
+import org.openmrs.module.reporting.data.patient.definition.ConvertedPatientDataDefinition;
+import org.openmrs.module.reporting.data.patient.definition.PatientIdentifierDataDefinition;
+import org.openmrs.module.reporting.data.person.definition.ConvertedPersonDataDefinition;
+import org.openmrs.module.reporting.data.person.definition.PersonAttributeDataDefinition;
+import org.openmrs.module.reporting.dataset.definition.PatientDataSetDefinition;
+import org.springframework.stereotype.Component;
+
+@Component
+@Builds({ "kenyaemr.common.report.duplicateNUPI" })
+public class DuplicateNUPIReportBuilder extends CalculationReportBuilder {
+
+	public static final String DATE_FORMAT = "dd/MM/yyyy";
+
+	@Override
+	protected void addColumns(CohortReportDescriptor report, PatientDataSetDefinition dsd) {
+		PatientIdentifierType upn = MetadataUtils.existing(PatientIdentifierType.class, HivMetadata._PatientIdentifierType.UNIQUE_PATIENT_NUMBER);
+		DataDefinition cccIdentifierDef = new ConvertedPatientDataDefinition("identifier", new PatientIdentifierDataDefinition(upn.getName(), upn), new IdentifierConverter());
+		PatientIdentifierType nupiIdentifierType = MetadataUtils.existing(PatientIdentifierType.class, CommonMetadata._PatientIdentifierType.NATIONAL_UNIQUE_PATIENT_IDENTIFIER);
+		DataDefinition nupiIdentifierDef = new ConvertedPatientDataDefinition("identifier", new PatientIdentifierDataDefinition(nupiIdentifierType.getName(), nupiIdentifierType), new IdentifierConverter());
+		PersonAttributeType duplicateSitesPA = Context.getPersonService().getPersonAttributeTypeByUuid(CommonMetadata._PersonAttributeType.DUPLICATE_NUPI_SITES_WITH_NATIONAL_REGISTRY);
+        PersonAttributeType duplicateTotalSitesPA = Context.getPersonService().getPersonAttributeTypeByUuid(CommonMetadata._PersonAttributeType.DUPLICATE_NUPI_TOTALSITES_WITH_NATIONAL_REGISTRY);
+		DataDefinition duplicateSiteNamesDef = new ConvertedPersonDataDefinition("attribute", new PersonAttributeDataDefinition(duplicateSitesPA.getName(), duplicateSitesPA));
+		DataDefinition duplicateTotalSitesDef = new ConvertedPersonDataDefinition("attribute", new PersonAttributeDataDefinition(duplicateTotalSitesPA.getName(), duplicateTotalSitesPA));
+
+		addStandardColumns(report, dsd);
+		dsd.addColumn("CCC", cccIdentifierDef, "");
+		dsd.addColumn("NUPI", nupiIdentifierDef, "");
+		dsd.addColumn("Active Facilities", duplicateSiteNamesDef, "");
+		dsd.addColumn("Total Sites", duplicateTotalSitesDef, "");
+		dsd.addColumn("Enrollment Date", new CalculationDataDefinition("Enrollment Date", new DateOfEnrollmentArtCalculation()), "", new DateArtStartDateConverter());
+		dsd.addColumn("Art Start Date", new ETLArtStartDateDataDefinition(), "", new DateConverter(DATE_FORMAT));
+		dsd.addColumn("First Regimen", new ETLFirstRegimenDataDefinition(), "");
+		dsd.addColumn("Current Regimen", new ETLCurrentRegimenDataDefinition(), "");
+		dsd.addColumn("Current Regimen Line", new ETLCurrentRegLineDataDefinition(), "");
+		dsd.addColumn("Next Appointment Date", new ETLNextAppointmentDateDataDefinition(), "", new DateConverter(DATE_FORMAT));
+	}
+}
diff --git a/api/src/main/resources/content/kenyaemr.common.xml b/api/src/main/resources/content/kenyaemr.common.xml
@@ -88,6 +88,7 @@
 				<ref bean="kenyaemr.common.report.moh711"/>
 				<ref bean="kenyaemr.common.report.sgbvlinelist"/>
 				<ref bean="kenyaemr.common.report.sgbvRegister"/>
+				<ref bean="kenyaemr.common.report.duplicateNUPI"/>
 			</set>
 		</property>
 		<property name="ehrReports">
@@ -106,6 +107,14 @@
 		</property>
 	</bean>
 
+	<bean id="kenyaemr.common.report.duplicateNUPI" class="org.openmrs.module.kenyacore.report.CalculationReportDescriptor">
+        <property name="targetUuid" value="7b60235c-f565-48ee-82ed-38a8dd5e9e53" />
+        <property name="name" value="Duplicate NUPI" />
+        <property name="description" value="Patients with Duplicate NUPI" />
+        <property name="calculation" value="org.openmrs.module.kenyaemr.calculation.library.nupi.DuplicateNUPICalculation" />
+        <property name="apps"><set><ref bean="kenyaemr.app.reports" /></set></property>
+    </bean>
+
 	<bean id="kenyaemr.config.regimen" class="org.openmrs.module.kenyaemr.regimen.RegimenConfiguration">
 		<property name="definitionsPath" value="regimens.xml" />
 	</bean>