Test scripts to investigate Mean Shift clustering with filtered VCF files containing mosaic variants.
- Call variants as normal against sample using GATK HaplotypeCaller
- Recall using GATK HaplotypeCaller with ploidy set to 5
- Filter high ploidy file agains normal VCF
- Filter to remove variants of no known medical impact and high frequency in ExAC
- Use Mosaic Clusterer to check for the clustering of mosaic variant (HTZ/HMZ)
