Targeted sequencing pipeline for the Royal Devon & Exeter Molecular Genetics lab.
Created by Garan Jones [email protected]
Ruby class based pipeline with Excel outputs. Requires following software to run
- Ruby 1.9+
The following can be configured separately (config.yaml):
- Java 1.8
- GenomeAnalysisTK-3.6.0
- alamut-batch-1.5.2
- picard-tools-2.5.0
- bwa-0.7.15
- R-3.2.0
###Common Errors