Adding coverage

peekxc · Nov 23, 2024 · 42430a3 · 42430a3
1 parent 30a4f56
commit 42430a3
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Showing 35 changed files with 3,461 additions and 306 deletions.
diff --git a/.cirrus.yml b/.cirrus.yml
@@ -1,13 +1,21 @@
 env: 
   CIRRUS_CLONE_SUBMODULES: true
 
+  # Coveralls configuration
+  CI_NAME: cirrus-ci
+  CI_BRANCH: ${CIRRUS_BRANCH}
+  CI_PULL_REQUEST: ${CIRRUS_PR}
+  CI_BUILD_NUMBER: ${CIRRUS_BUILD_ID}
+  CI_BUILD_URL: https://cirrus-ci.com/build/${CIRRUS_BUILD_ID}
+  COVERALLS_PARALLEL: "true"
+  COVERALLS_FLAG_NAME: ${CIRRUS_TASK_NAME}
+
 # See: https://github.com/pypa/manylinux
 # 2_24_x86_64 is EOF / discontinued. 
 # quay.io/pypa/manylinux2014_x86_64  # CentOS 7  (use GCC 10)
 # quay.io/pypa/manylinux_2_24_x86_64 # Debian    (unknown)
 # quay.io/pypa/manylinux_2_28_x86_64 # AlmaLinux (use clang)
 
-
 build_and_test_task:
   only_if: changesInclude('.cirrus.yml', '**.{h,cpp,py}')
   container:
@@ -35,6 +43,9 @@ build_and_test_task:
     python -m pip install '.[test]' --verbose
   test_script: |
     python -m pytest tests/ --cov=primate --benchmark-skip
+  submit_coverage: |
+    pipx run coverage xml -o coverage.xml
+    pipx run 'coveralls<4' --submit coverage.xml
   uninstall_script: |
     python -m pip uninstall primate --yes
   wheel_script: |

diff --git a/docs/_quarto.yml b/docs/_quarto.yml
@@ -58,6 +58,14 @@ quartodoc:
         - name: xtrace
           package: trace
           signature_name: full
+    - title: Diagonal
+      contents:
+        - name: diag
+          package: diagonal
+          signature_name: full
+        - name: xdiag
+          package: diagonal
+          signature_name: full
     - title: Operators
       contents:
         - name: MatrixFunction

diff --git a/docs/_sidebar.yml b/docs/_sidebar.yml
@@ -23,6 +23,10 @@ website:
         - reference/hutchpp.qmd
         - reference/xtrace.qmd
         section: Trace
+      - contents:
+        - reference/diag.qmd
+        - reference/xdiag.qmd
+        section: Diagonal
       - contents:
         - reference/MatrixFunction.qmd
         - reference/Toeplitz.qmd

diff --git a/docs/_site/basic/imate_compare.html b/docs/_site/basic/imate_compare.html
@@ -230,138 +230,220 @@
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="true">
- <span class="menu-text">Trace</span></a>
+ <span class="menu-text">Lanczos</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-3" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/hutch.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">hutch</span></a>
+  <a href="../reference/lanczos.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">lanczos</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/rayleigh_ritz.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">rayleigh_ritz</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/lanczos_quadrature.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">lanczos_quadrature</span></a>
   </div>
 </li>
       </ul>
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
- <span class="menu-text">Operators</span></a>
+ <span class="menu-text">Trace</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/MatrixFunction.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">MatrixFunction</span></a>
+  <a href="../reference/hutch.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">hutch</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/Toeplitz.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Toeplitz</span></a>
+  <a href="../reference/hutchpp.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">hutchpp</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/normalize_unit.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">normalize_unit</span></a>
+  <a href="../reference/xtrace.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">xtrace</span></a>
   </div>
 </li>
       </ul>
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true">
- <span class="menu-text">Stochastic</span></a>
+ <span class="menu-text">Diagonal</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/isotropic.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">isotropic</span></a>
+  <a href="../reference/diag.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">diag</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/symmetric.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">symmetric</span></a>
+  <a href="../reference/xdiag.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">xdiag</span></a>
   </div>
 </li>
       </ul>
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
- <span class="menu-text">Lanczos</span></a>
+ <span class="menu-text">Operators</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/lanczos.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">lanczos</span></a>
+  <a href="../reference/MatrixFunction.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">MatrixFunction</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/rayleigh_ritz.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">rayleigh_ritz</span></a>
+  <a href="../reference/Toeplitz.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Toeplitz</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/lanczos_quadrature.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">lanczos_quadrature</span></a>
+  <a href="../reference/normalize_unit.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">normalize_unit</span></a>
   </div>
 </li>
       </ul>
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true">
- <span class="menu-text">Stats</span></a>
+ <span class="menu-text">Random</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/stats.Covariance.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">stats.Covariance</span></a>
+  <a href="../reference/isotropic.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">isotropic</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/stats.ConvergenceEstimator.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">stats.ConvergenceEstimator</span></a>
+  <a href="../reference/symmetric.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">symmetric</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/haar.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">haar</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-8" role="navigation" aria-expanded="true">
+ <span class="menu-text">Estimators</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-8" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-8" class="collapse list-unstyled sidebar-section depth2 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/Estimator.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Estimator</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/stats.MeanEstimator.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">stats.MeanEstimator</span></a>
+  <a href="../reference/MeanEstimator.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">MeanEstimator</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/stats.CentralLimitEstimator.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">stats.CentralLimitEstimator</span></a>
+  <a href="../reference/ControlVariableEstimator.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ControlVariableEstimator</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/ConvergenceCriterion.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ConvergenceCriterion</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/CountCriterion.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">CountCriterion</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/ToleranceCriterion.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ToleranceCriterion</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/ConfidenceCriterion.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ConfidenceCriterion</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/KneeCriterion.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">KneeCriterion</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-9" role="navigation" aria-expanded="true">
+ <span class="menu-text">Stats</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-9" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-9" class="collapse list-unstyled sidebar-section depth2 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/stats.Covariance.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">stats.Covariance</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../reference/stats.ControlVariableEstimator.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">stats.ControlVariableEstimator</span></a>
+  <a href="../reference/stats.confidence_interval.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">stats.confidence_interval</span></a>
   </div>
 </li>
       </ul>