Repository for analyses related to the manuscript: "Mapping Hippocampal and Thalamic Atrophy in Epilepsy: A 7T MRI Study"
We provide a stand-alone Jupyter notebook as a companion to the manuscript. The notebook runs all the analyses required to generate figures and findings in the manuscript.
Please make sure you have Anaconda installed. After cloning, open the repository folder in a terminal window and type:
conda env create -f environment.yml
this will create a new Python virtual environment with all the required libraries
Activate the environment with:
conda activate LDA-subfield-atrophy
In order to run the analysis, clone this repository and install the conda virtual environment. Open the Jupyter Notebook manuscript_companion.ipynb
and execute the analyses from there. If the conda environment was setup appropriately, everything should run correctly.