Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

looper report runs pipestat summarize multiple times #522

Open
donaldcampbelljr opened this issue Sep 10, 2024 · 0 comments
Open

looper report runs pipestat summarize multiple times #522

donaldcampbelljr opened this issue Sep 10, 2024 · 0 comments
Labels

Comments

@donaldcampbelljr
Copy link
Contributor

donaldcampbelljr commented Sep 10, 2024

I noticed in the refactored hello looper examples that looper report seems to call pipestat summarize multiple times (seemingly once per sample):

(venv) drc@databio:~/GITHUB/hello_looper/hello_looper/pipestat_example$ looper report --portable
Looper version: 2.0.0a1
Command: report
Using looper config (.looper.yaml).
Portable flag set: True
Building index page for pipeline: count_lines
Creating objects summary
'count_lines' pipeline stats summary (n=4): /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/count_lines_stats_summary.tsv
'count_lines' pipeline objects summary (n=0): /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/count_lines_objs_summary.yaml
 * Creating sample pages
 * Creating object pages
Report zip file successfully created: /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/portable_reports/count_lines_report_portable
Report directory: /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/portable_reports/count_lines/index.html
Portable flag set: True
Building index page for pipeline: count_lines
Creating objects summary
'count_lines' pipeline stats summary (n=4): /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/count_lines_stats_summary.tsv
'count_lines' pipeline objects summary (n=0): /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/count_lines_objs_summary.yaml
 * Creating sample pages
 * Creating object pages
Report zip file successfully created: /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/portable_reports/count_lines_report_portable
Report directory: /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/portable_reports/count_lines/index.html
Portable flag set: True
Building index page for pipeline: count_lines
Creating objects summary
'count_lines' pipeline stats summary (n=4): /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/count_lines_stats_summary.tsv
'count_lines' pipeline objects summary (n=0): /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/count_lines_objs_summary.yaml
 * Creating sample pages
 * Creating object pages
Report zip file successfully created: /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/portable_reports/count_lines_report_portable
Report directory: /home/drc/GITHUB/hello_looper/hello_looper/pipestat_example/./results/portable_reports/count_lines/index.html

It should be iterating over each pipeline interface.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant