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I cannot find out how to change the output file location for looper report. Is it just missing from the CLI docs?
In this case, I need it to somewhere other than the default:
looper report --portable
Looper version: 2.0.0a2
Command: report
Using looper config (.looper.yaml).
No config key in Project, or reading project from dict
Portable flag set: True
Building index page for pipeline: PEPATAC
Creating objects summary
'PEPATAC' pipeline stats summary (n=1): /project/shefflab/brickyard/results_pipeline/tlgl_atac/PEPATAC_stats_summary.tsv
'PEPATAC' pipeline objects summary (n=0): /project/shefflab/brickyard/results_pipeline/tlgl_atac/PEPATAC_objs_summary.yaml
* Creating sample pages
* Creating object pages
Traceback (most recent call last):
File "/sfs/applications/202406_build/software/standard/core/miniforge/24.3.0-py3.11/lib/python3.11/shutil.py", line 1018, in _make_zipfile
zf.write(path, arcname)
File "/sfs/applications/202406_build/software/standard/core/miniforge/24.3.0-py3.11/lib/python3.11/zipfile.py", line 1793, in write
with open(filename, "rb") as src, self.open(zinfo, 'w') as dest:
File "/sfs/applications/202406_build/software/standard/core/miniforge/24.3.0-py3.11/lib/python3.11/zipfile.py", line 1207, in close
self._fileobj.seek(self._zinfo.header_offset)
OSError: [Errno 122] Disk quota exceeded
The text was updated successfully, but these errors were encountered:
Also, I"m not sure if this is a separate or what the problem is: but actually my disk quota should not be exceeded... so I"m not sure why it's giving that error.
That might not be a looper issue, I'll have to troubleshoot.
I cannot find out how to change the output file location for looper report. Is it just missing from the CLI docs?
In this case, I need it to somewhere other than the default:
The text was updated successfully, but these errors were encountered: