making ready for release to pypi

pfizer-opensource · Sep 20, 2024 · ef4e3d3 · ef4e3d3
1 parent cc32e10
commit ef4e3d3
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Showing 3 changed files with 2 additions and 21 deletions.
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
@@ -53,22 +53,3 @@ jobs:
         path: dist/
     - name: Publish package distributions to PyPI
       uses: pypa/gh-action-pypi-publish@release/v1
-#
-#  pypi-publish:
-#    needs: [build]
-#    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
-#    name: Upload release to PyPI
-#    runs-on: ubuntu-latest
-#    environment:
-#      name: release
-#      url: https://pypi.org/p/bigwig-loader
-#    permissions:
-#      id-token: write  # IMPORTANT: this permission is mandatory for trusted publishing
-#    steps:
-#    - name: Download all the dists
-#      uses: actions/download-artifact@v4
-#      with:
-#        name: python-package-distributions
-#        path: dist/
-#    - name: Publish package distributions to PyPI
-#      uses: pypa/gh-action-pypi-publish@release/v1
diff --git a/environment.yml b/environment.yml
@@ -1,4 +1,4 @@
-name: bwl
+name: bigwig-loader
 channels:
   - rapidsai
   - conda-forge
@@ -15,7 +15,6 @@ dependencies:
   - pandas
   - pyfaidx
   - ncls
-#  - htslib
   - pydantic
   - pydantic-settings
   - python-dotenv

diff --git a/pyproject.toml b/pyproject.toml
@@ -33,6 +33,7 @@ classifiers = [
 ]
 dependencies = [
     "numpy",
+    "cupy",
     "cython",
     "pandas",
     "ncls",