updated tracked test data

phac-nml · Apr 2, 2024 · 4a32688 · 4a32688
1 parent 0cef238
commit 4a32688
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diff --git a/tests/data/clusters/expected_clusters.txt b/tests/data/clusters/expected_clusters.txt
@@ -0,0 +1,4 @@
+id	address	level_1	level_2	level_3
+sample1	1.1.1	1	1	1
+sample2	1.1.1	1	1	1
+sample3	2.2.2	2	2	2
diff --git a/tests/data/clusters/expected_tree.nwk b/tests/data/clusters/expected_tree.nwk
@@ -0,0 +1 @@
+((sample2:0.000000,sample1:0.000000):16.666666666666668,sample3:33.333333);
diff --git a/tests/data/distances/expected_dists.tsv b/tests/data/distances/expected_dists.tsv
@@ -0,0 +1,4 @@
+dists	sample1	sample2	sample3
+sample1	0.0	0.0	33.333333333333336
+sample2	0.0	0.0	33.333333333333336
+sample3	33.333333333333336	33.333333333333336	0.0
diff --git a/tests/data/profiles/expected-profile1.tsv b/tests/data/profiles/expected-profile1.tsv
@@ -0,0 +1,4 @@
+sample_id	l1	l2	l3
+sample1	1	1	1
+sample2	1	1	1
+sample3	1	1	2
diff --git a/tests/data/reports/sample1.mlst.json b/tests/data/reports/sample1.mlst.json
@@ -0,0 +1,7 @@
+{
+    "sample1": {
+        "l1": "1",
+        "l2": "1",
+        "l3": "1"
+    }
+}
diff --git a/tests/data/reports/sample2.mlst.json b/tests/data/reports/sample2.mlst.json
@@ -0,0 +1,7 @@
+{
+    "sample2": {
+        "l1": "1",
+        "l2": "1",
+        "l3": "1"
+    }
+}
diff --git a/tests/data/reports/sample3.mlst.json b/tests/data/reports/sample3.mlst.json
@@ -0,0 +1,7 @@
+{
+    "sample3": {
+        "l1": "1",
+        "l2": "1",
+        "l3": "2"
+    }
+}
diff --git a/tests/data/reports/sampleQ.mlst.json b/tests/data/reports/sampleQ.mlst.json
@@ -0,0 +1,7 @@
+{
+    "sampleQ": {
+        "l1": "1",
+        "l2": "2",
+        "l3": "1"
+    }
+}
diff --git a/tests/data/samplesheets/samplesheet1.csv b/tests/data/samplesheets/samplesheet1.csv
@@ -0,0 +1,5 @@
+sample,profile_type,mlst_alleles
+sampleQ,false,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json
+sample1,true,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json
+sample2,true,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2.mlst.json
+sample3,true,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3.mlst.json
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		@@ -0,0 +1 @@
		((sample2:0.000000,sample1:0.000000):16.666666666666668,sample3:33.333333);