updated readme

README.md

@@ -51,8 +51,8 @@ Under the usage section you can find example commands, instructions for configur
 - [GTDB Mash Sketch](https://zenodo.org/record/8408361): required for speciation and determination if sample is metagenomic
 - [Decontamination Index](https://zenodo.org/record/8408557): Required for decontamination of reads (it is simply a minimap2 index)
 - [Kraken2 nt database](https://benlangmead.github.io/aws-indexes/k2): Required for binning of metagenommic data and is an alternative to using Mash for speciation
-- [Bakta database](https://zenodo.org/record/7669534): Running Bakta is optional and there is a light database option, however the full one is recommended. You will have to unzip and un-tar the database for usage.
-- [StarAMR database **Optional**](https://github.com/phac-nml/staramr#database-build): Running StarAMR is optional and requires downloading the StarAMR databases. Also if you wish to avoid downloading the database, the container for StarAMR has a database included which mikrokondo will default to using if one is not specified.
+- [Bakta database](https://zenodo.org/record/7669534): Running Bakta is optional and there is a light database option, however the full one is recommended. You will have to unzip and un-tar the database for usage. You can skip running Bakta however making the requirement of downloading this database **optional**.
+- [StarAMR database](https://github.com/phac-nml/staramr#database-build): Running StarAMR is optional and requires downloading the StarAMR databases. Also if you wish to avoid downloading the database, the container for StarAMR has a database included which mikrokondo will default to using if one is not specified making this requirement **optional**.
 
 ### Fields to update with resources
 The above downloadable resources must be updated in the following places in your `nextflow.config`. The spots to update in the params section of the `nextflow.config` are listed below: