added dot files

.gitignore

@@ -0,0 +1,27 @@
+.nextflow*
+work/
+data/
+test_data/
+test_data/*
+tests/*
+results/
+.DS_Store
+testing/
+testing*
+*.pyc
+*log
+.devcontainer
+.github
+*.jar
+.*
+slurm*
+*.fasta
+FutureLabelNotes.txt
+*.csv
+*.tsv
+databases/**
+Makefile
+*.bak
+nf-test.config
+docs/TODO.md
+.git.bak

.nf-core.yml

@@ -0,0 +1,15 @@
+repository_type: pipeline
+lint:
+  files_exist:
+  - CODE_OF_CONDUCT.md
+  - assets/nf-core-mikrokondo_logo_light.png
+  - docs/images/nf-core-mikrokondo_logo_light.png
+  - docs/images/nf-core-mikrokondo_logo_dark.png
+  - .github/ISSUE_TEMPLATE/config.yml
+  - .github/workflows/awstest.yml
+  - .github/workflows/awsfulltest.yml
+  nextflow_config:
+  - manifest.name
+  - manifest.homePage
+  multiqc_config:
+  - report_comment

.prettierignore

@@ -0,0 +1,12 @@
+email_template.html
+adaptivecard.json
+slackreport.json
+.nextflow*
+work/
+data/
+results/
+.DS_Store
+testing/
+testing*
+*.pyc
+bin/