updated mash error strategy

phac-nml · Oct 13, 2023 · ff1e350 · ff1e350
1 parent 7688198
commit ff1e350
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -324,7 +324,7 @@ process {
     withName: MASH_SCREEN {
         def dir_out = null
         //errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
-        errorStrategy = 'ignore'
+        errorStrategy = { task.attempt <= task.maxRetries ? sleep(Math.pow(2, task.attempt) * 200 as long) && 'retry' : 'finish' }
         maxForks = 20
         //dir_out =  process.toString().contains("QC_READS") ? "read_quality/${params.mash.output_dir}/mash" : "taxon_determination/mash"
         ext.args = "-w"