Propagate renv.lock from pharmaverse/admiralci (#1938)

* renv update from pharmaverse/admiralci * renv update from pharmaverse/admiralci * Run workflows --------- Co-authored-by: dgrassellyb <[email protected]> Co-authored-by: Ben Straub <[email protected]> Co-authored-by: cicdguy <[email protected]> Co-authored-by: cicdguy <[email protected]>
pharmaverse · Jun 6, 2023 · c8963f4 · c8963f4
1 parent af4aeab
commit c8963f4
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Showing 4 changed files with 70 additions and 69 deletions.
diff --git a/.Rprofile b/.Rprofile
@@ -1,15 +1,14 @@
 # Set renv profile base on R version.
-renv_profile <- paste(R.version$major, substr(R.version$minor, 1, 1), sep = ".")
-if (file.exists("./renv/profile")) {
-  message("Using renv profile from `renv/profile` file.")
-} else if (renv_profile %in% c("4.1", "4.2", "4.3")) {
-  message("Set renv profile to `", renv_profile, "`")
-  Sys.setenv("RENV_PROFILE" = renv_profile)
-} else {
-  message("This repository do not contains the renv profile for your R version.")
-}
-
-if (Sys.getenv("GITHUB_ACTIONS") == "") {
+if ((Sys.getenv("GITHUB_ACTIONS") == "") && (Sys.getenv("DOCKER_CONTAINER_CONTEXT") == "")) {
+  renv_profile <- paste(R.version$major, substr(R.version$minor, 1, 1), sep = ".")
+  if (file.exists("./renv/profile")) {
+    message("Using renv profile from `renv/profile` file.")
+  } else if (renv_profile %in% c("4.1", "4.2", "4.3")) {
+    message("Set renv profile to `", renv_profile, "`")
+    Sys.setenv("RENV_PROFILE" = renv_profile)
+  } else {
+    message("This repository do not contains the renv profile for your R version.")
+  }
   source("renv/activate.R")
 } else {
   options(repos = c(CRAN = "https://cran.rstudio.com"))

diff --git a/renv.lock b/renv.lock
@@ -421,12 +421,13 @@
     },
     "dplyr": {
       "Package": "dplyr",
-      "Version": "1.0.8",
+      "Version": "1.1.1",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "R6",
+        "cli",
         "generics",
         "glue",
         "lifecycle",
@@ -439,7 +440,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "ef47665e64228a17609d6df877bf86f2"
+      "Hash": "eb5742d256a0d9306d85ea68756d8187"
     },
     "ellipsis": {
       "Package": "ellipsis",
@@ -739,15 +740,16 @@
     },
     "lifecycle": {
       "Package": "lifecycle",
-      "Version": "1.0.1",
+      "Version": "1.0.3",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
+        "cli",
         "glue",
         "rlang"
       ],
-      "Hash": "a6b6d352e3ed897373ab19d8395c98d0"
+      "Hash": "001cecbeac1cff9301bdc3775ee46a86"
     },
     "lintr": {
       "Package": "lintr",
@@ -837,13 +839,11 @@
     },
     "pillar": {
       "Package": "pillar",
-      "Version": "1.7.0",
+      "Version": "1.9.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "cli",
-        "crayon",
-        "ellipsis",
         "fansi",
         "glue",
         "lifecycle",
@@ -852,7 +852,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "51dfc97e1b7069e9f7e6f83f3589c22e"
+      "Hash": "15da5a8412f317beeee6175fbc76f4bb"
     },
     "pkgbuild": {
       "Package": "pkgbuild",
@@ -1084,14 +1084,14 @@
     },
     "rlang": {
       "Package": "rlang",
-      "Version": "1.0.6",
+      "Version": "1.1.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "4ed1f8336c8d52c3e750adcdc57228a7"
+      "Hash": "dc079ccd156cde8647360f473c1fa718"
     },
     "rmarkdown": {
       "Package": "rmarkdown",
@@ -1394,12 +1394,11 @@
     },
     "tibble": {
       "Package": "tibble",
-      "Version": "3.1.6",
+      "Version": "3.2.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
-        "ellipsis",
         "fansi",
         "lifecycle",
         "magrittr",
@@ -1410,7 +1409,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "8a8f02d1934dfd6431c671361510dd0b"
+      "Hash": "37695ff125982007d42a59ad10982ff2"
     },
     "tidyr": {
       "Package": "tidyr",
@@ -1436,18 +1435,19 @@
     },
     "tidyselect": {
       "Package": "tidyselect",
-      "Version": "1.1.2",
+      "Version": "1.2.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
-        "ellipsis",
+        "cli",
         "glue",
-        "purrr",
+        "lifecycle",
         "rlang",
-        "vctrs"
+        "vctrs",
+        "withr"
       ],
-      "Hash": "17f6da8cfd7002760a859915ce7eef8f"
+      "Hash": "79540e5fcd9e0435af547d885f184fd5"
     },
     "tinytex": {
       "Package": "tinytex",
@@ -1502,16 +1502,17 @@
     },
     "vctrs": {
       "Package": "vctrs",
-      "Version": "0.4.1",
+      "Version": "0.6.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "cli",
         "glue",
+        "lifecycle",
         "rlang"
       ],
-      "Hash": "8b54f22e2a58c4f275479c92ce041a57"
+      "Hash": "7e877404388794361277be95d8445de8"
     },
     "waldo": {
       "Package": "waldo",

diff --git a/renv/profiles/4.1/renv.lock b/renv/profiles/4.1/renv.lock
@@ -421,12 +421,13 @@
     },
     "dplyr": {
       "Package": "dplyr",
-      "Version": "1.0.8",
+      "Version": "1.1.1",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "R6",
+        "cli",
         "generics",
         "glue",
         "lifecycle",
@@ -439,7 +440,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "ef47665e64228a17609d6df877bf86f2"
+      "Hash": "eb5742d256a0d9306d85ea68756d8187"
     },
     "ellipsis": {
       "Package": "ellipsis",
@@ -739,15 +740,16 @@
     },
     "lifecycle": {
       "Package": "lifecycle",
-      "Version": "1.0.1",
+      "Version": "1.0.3",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
+        "cli",
         "glue",
         "rlang"
       ],
-      "Hash": "a6b6d352e3ed897373ab19d8395c98d0"
+      "Hash": "001cecbeac1cff9301bdc3775ee46a86"
     },
     "lintr": {
       "Package": "lintr",
@@ -837,13 +839,11 @@
     },
     "pillar": {
       "Package": "pillar",
-      "Version": "1.7.0",
+      "Version": "1.9.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "cli",
-        "crayon",
-        "ellipsis",
         "fansi",
         "glue",
         "lifecycle",
@@ -852,7 +852,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "51dfc97e1b7069e9f7e6f83f3589c22e"
+      "Hash": "15da5a8412f317beeee6175fbc76f4bb"
     },
     "pkgbuild": {
       "Package": "pkgbuild",
@@ -1084,14 +1084,14 @@
     },
     "rlang": {
       "Package": "rlang",
-      "Version": "1.0.6",
+      "Version": "1.1.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "4ed1f8336c8d52c3e750adcdc57228a7"
+      "Hash": "dc079ccd156cde8647360f473c1fa718"
     },
     "rmarkdown": {
       "Package": "rmarkdown",
@@ -1394,12 +1394,11 @@
     },
     "tibble": {
       "Package": "tibble",
-      "Version": "3.1.6",
+      "Version": "3.2.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
-        "ellipsis",
         "fansi",
         "lifecycle",
         "magrittr",
@@ -1410,7 +1409,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "8a8f02d1934dfd6431c671361510dd0b"
+      "Hash": "37695ff125982007d42a59ad10982ff2"
     },
     "tidyr": {
       "Package": "tidyr",
@@ -1436,18 +1435,19 @@
     },
     "tidyselect": {
       "Package": "tidyselect",
-      "Version": "1.1.2",
+      "Version": "1.2.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
-        "ellipsis",
+        "cli",
         "glue",
-        "purrr",
+        "lifecycle",
         "rlang",
-        "vctrs"
+        "vctrs",
+        "withr"
       ],
-      "Hash": "17f6da8cfd7002760a859915ce7eef8f"
+      "Hash": "79540e5fcd9e0435af547d885f184fd5"
     },
     "tinytex": {
       "Package": "tinytex",
@@ -1502,16 +1502,17 @@
     },
     "vctrs": {
       "Package": "vctrs",
-      "Version": "0.4.1",
+      "Version": "0.6.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "cli",
         "glue",
+        "lifecycle",
         "rlang"
       ],
-      "Hash": "8b54f22e2a58c4f275479c92ce041a57"
+      "Hash": "7e877404388794361277be95d8445de8"
     },
     "waldo": {
       "Package": "waldo",