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* add rstudio bash script * Apply suggestions from code review * Fix .Rprofile style * Change the admiral default propagation branch to main * Change the admiraldev default propagation branch to main --------- Co-authored-by: pharmaverse-bot <[email protected]> Co-authored-by: Adam Foryś <[email protected]>
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Original file line number | Diff line number | Diff line change |
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#!/bin/bash | ||
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# move script rstudio into /usr/bin | ||
sudo cp "$(pwd)/.devcontainer/rstudio.sh" /usr/bin/rstudio | ||
sudo chmod +x /usr/bin/rstudio | ||
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# Restore renv and install staged dependencies | ||
R -q -e 'renv::restore(lockfile = file.path("renv", "profiles", paste(R.version$major, substr(R.version$minor, 1, 1), sep = "."), "renv.lock")); staged.dependencies::install_deps(staged.dependencies::dependency_table(project = ".", verbose = 1), verbose = 1);' | ||
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# Define rstudio default working directory | ||
jq --arg folder "$(pwd)/" '. + { "initial_working_directory": $folder }' .devcontainer/rstudio-prefs.json > ~/.config/rstudio/rstudio-prefs.json |
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@@ -0,0 +1,5 @@ | ||
#!/bin/bash | ||
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$BROWSER "https://${CODESPACE_NAME}-8787.${GITHUB_CODESPACES_PORT_FORWARDING_DOMAIN}" | ||
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exit 1 |
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