Use centralized CRAN status check action (#161)

.github/workflows/cran-status.yml

@@ -44,108 +44,9 @@ jobs:
     container:
       image: rocker/tidyverse:latest
     steps:
-      - name: Checkout repo
-        uses: actions/checkout@v3
+      - name: Run CRAN Status Action
+        uses: insightsengineering/cran-status-action@v1
         with:
-          fetch-depth: 0
-
-      - name: Get Date
-        id: today
-        run: |
-          echo "date=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
-          
-      - name: Get current package name
-        id: current_package
-        run: |
-          package_name=$(grep "Package:" DESCRIPTION | awk '{print $NF}')
-          echo "package_name=$package_name" >> $GITHUB_OUTPUT 
-
-      - name: Create orphan branch
-        id: create_orphan
-        run: |
-          git config --global --add safe.directory ${PWD}
-          git config --global user.email "[email protected]"
-          git config --global user.name "pharmaverse-bot"
-          git fetch origin cran_status:cran_status || true 
-          cran_status_branch=$(git branch -a --list cran_status)
-          # Try to create a new orphan branch if it does not already exist
-          if [ -z "${cran_status_branch}" ]
-          then {
-            echo "🟡 Create cran_status branch"
-            git checkout --orphan cran_status
-            mkdir -p /tmp/${{ github.sha }}
-            cp -r .git /tmp/${{ github.sha }}
-            cd /tmp/${{ github.sha }}
-            echo "# CRAN Status" > README.md
-            git reset
-            git add --all -f
-            git commit -m "Initialize orphan cran_status branch"
-            orphan_exists='false'
-            git push --set-upstream origin cran_status
-          } else {
-            echo "🟢 cran_status branch exists!"
-            orphan_exists='true'
-            git checkout
-          }
-          fi
-          echo "orphan_exists=$orphan_exists" >> $GITHUB_OUTPUT 
-      
-      - name: Compute Cran Status md5 codes
-        uses: pharmaverse/admiralci/.github/actions/cran-status-extract@main
-        with: 
           statuses: "${{ inputs.statuses }}"
-          package: "${{ steps.current_package.outputs.package_name }}"
-
-      - name: Update cran_status branch
-        id: cran_errors_status
-        run: |
-          new_errors=false
-          cran_status_path="${{ inputs.path }}/cran_errors.csv"
-          if [  -e ./cran_errors.csv ]; then
-            current_status_content=$(cat "./cran_errors.csv")
-            mkdir -p cran_status
-            # read previous cran status from this branch (ls sort files by alphabetic number)
-            if [ -z "$(ls -A ./cran_status)" ]; then
-              # case first writing on the orphan branch (cran_status dir is empty)
-              last_status_content="FIRST WRITING"
-            else
-              last_status_file=$(ls ./cran_status | tail -n 1)
-              last_status_content=$(cat "./cran_status/$last_status_file")
-            fi
-            # check if the status is a new error:
-            if [ "$current_status_content" != "$last_status_content" ]; then
-              echo "New errors on the cran status found - package ${{ steps.current_package.outputs.package_name }}"
-              new_errors=true
-              cp ./cran_errors.csv "./cran_status/${{ steps.today.outputs.date }}.csv"
-            else 
-              echo "New errors on the cran status found, but identical to previous ones - package ${{ steps.current_package.outputs.package_name }}"
-            fi
-          else
-            echo "No errors found on the cran status - package ${{ steps.current_package.outputs.package_name }}"
-          fi 
-          echo "new_errors=$new_errors" >> $GITHUB_OUTPUT
-
-      - name: Report Status
-        if: ${{ steps.cran_errors_status.outputs.new_errors == 'true' }}
-        uses: peter-evans/create-issue-from-file@v4
-        with:
-          title: "URGENT! Failed CRAN Checks: ${{ steps.today.outputs.date }}"
-          content-filepath: ./${{ inputs.path }}/cran-status.md
-          assignees: ${{ inputs.issue-assignees }}
-
-      - name: Clean Repo and add changes
-        if: ${{ steps.cran_errors_status.outputs.new_errors == 'true' }}
-        run: |
-          rm ./cran_errors.csv 2> /dev/null
-          rm ./cran-status.md 2> /dev/null
-          git config --global --add safe.directory ${PWD}
-          git add "./cran_status/${{ steps.today.outputs.date }}.csv"
-
-          
-      - name: Commit and push to orphan branch
-        if: ${{ steps.cran_errors_status.outputs.new_errors == 'true' }}
-        uses: stefanzweifel/git-auto-commit-action@v4
-        with:
-          commit_message: update cran status "${{ steps.today.outputs.date }}"
-          branch: cran_status
-          create_branch: false
+          issue-assignees: "${{ inputs.issue-assignees }}"
+          path: "${{ inputs.path }}"

.github/workflows/pkgdown.yml

@@ -141,7 +141,7 @@ jobs:
       - name: Install package
         run: renv::install(".", dependencies = "no-deps")
         shell: Rscript {0}
-        
+
       - name: Add script to fix rdrr.io links for pharmaverse packages
         uses: "DamianReeves/[email protected]"
         with:
@@ -184,7 +184,7 @@ jobs:
 
               invisible()
             }
-            
+
             setHook("UserHook::admiralci::tweak_page", tweak_rdrr_url)
             print("Tweak rdrr.io links for admiral pharmaverse packages.")