First try at fixing biopython installation to get current version

phenix-project · Dec 8, 2022 · 56e8c4e · 56e8c4e
1 parent 02d5608
commit 56e8c4e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/alphafold2/phenix_colab_utils.py b/alphafold2/phenix_colab_utils.py
@@ -133,7 +133,7 @@ def install_alphafold(version = None, content_dir = None,
   # install dependencies
   print( "Installing biopython ...")
   if biopython:
-    runsh("pip -q install biopython dm-haiku==0.0.5 ml-collections py3Dmol")
+    runsh("pip install git+https://github.com/biopython/biopython.git dm-haiku==0.0.5 ml-collections py3Dmol")
   # download model
   if alphafold and (not os.path.isdir("alphafold")):
     print("Installing AlphaFold...")