Add precomputed phenotype_of_part_of.

phenoscape · Apr 3, 2020 · 50fea5d · 50fea5d
1 parent 8bab2aa
commit 50fea5d
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/src/main/scala/org/phenoscape/owl/Vocab.scala b/src/main/scala/org/phenoscape/owl/Vocab.scala
@@ -92,6 +92,7 @@ object Vocab {
   val has_absence_of = ObjectProperty("http://purl.org/phenoscape/vocab.owl#has_absence_of")
   val has_phenotypic_profile = IRI.create("http://purl.org/phenoscape/vocab.owl#has_phenotypic_profile")
   val phenotype_of = ObjectProperty("http://purl.org/phenoscape/vocab.owl#phenotype_of")
+  val phenotype_of_part_of = ObjectProperty("http://purl.org/phenoscape/vocab.owl#phenotype_of_reflexive_part_of")
   val has_part_inhering_in = ObjectProperty("http://purl.org/phenoscape/vocab.owl#has_part_inhering_in")
   val in_taxon = ObjectProperty("http://purl.obolibrary.org/obo/RO_0002162")
 

diff --git a/src/main/scala/org/phenoscape/owl/build/PhenoscapeKB.scala b/src/main/scala/org/phenoscape/owl/build/PhenoscapeKB.scala
@@ -232,6 +232,7 @@ object PhenoscapeKB extends KnowledgeBaseBuilder {
     val hasPartsInheringIns = anatomicalEntities.flatMap(NamedRestrictionGenerator.createRestriction(has_part_inhering_in, _))
     addTriples(hasPartsInheringIns, bigdata, graphURI)
     val phenotypeOfs = anatomicalEntities.flatMap(NamedRestrictionGenerator.createRestriction(phenotype_of, _))
+    val phenotypeOfPartOfs = anatomicalEntities.flatMap(NamedRestrictionGenerator.createRestriction(phenotype_of_part_of, _))
     val absences = anatomicalEntities.flatMap(AbsenceClassGenerator.createAbsenceClass)
     addTriples(absences, bigdata, graphURI)
     val namedHasPartClasses = anatomicalEntities.map(_.getIRI).map(NamedRestrictionGenerator.getRestrictionIRI(has_part.getIRI, _)).map(Class(_))
@@ -252,7 +253,7 @@ object PhenoscapeKB extends KnowledgeBaseBuilder {
 
     val allTBox = ro.axioms ++ uberon.axioms ++ homology.axioms ++ pato.axioms ++ bspo.axioms ++ vto.axioms ++ vtoToNCBI.axioms ++ zfa.axioms ++ xao.axioms ++ hp.axioms ++ mp.axioms ++
       caroToUberon.axioms ++ zfaToUberon.axioms ++ xaoToUberon.axioms ++ mgiToEMAPA.axioms ++ emapaToUberon.axioms ++ eco.axioms ++
-      parts ++ hasParts ++ hasPartsInheringIns ++ phenotypeOfs ++ presences ++ absences ++ absenceNegationEquivalences ++ developsFromRulesForAbsence ++ subsumers ++ tboxFromData ++ phenoscapeVocab.axioms
+      parts ++ hasParts ++ hasPartsInheringIns ++ phenotypeOfs ++ phenotypeOfPartOfs ++ presences ++ absences ++ absenceNegationEquivalences ++ developsFromRulesForAbsence ++ subsumers ++ tboxFromData ++ phenoscapeVocab.axioms
 
     val coreTBox = ro.axioms ++ uberon.axioms ++ homology.axioms ++ pato.axioms ++ bspo.axioms ++ vto.axioms ++ vtoToNCBI.axioms ++ zfa.axioms ++ xao.axioms ++ hp.axioms ++ mp.axioms ++
       caroToUberon.axioms ++ zfaToUberon.axioms ++ xaoToUberon.axioms ++ mgiToEMAPA.axioms ++ emapaToUberon.axioms ++ eco.axioms ++