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philshams/README.md

Hi there 👋

🐁 Analyzing videos of animal behavior?
behavior-opto-analysis has some neat functions for visualization and video registration

🔬 Processing brain sections?
Check out some image analysis tools I've worked on: SHARP-Track and slicereg.

📐 Looking for a gridworld environment in which reinforcement-learning agents minimize Euclidean distances rather than grid distance?
Check out Euclidean_Gridworld_RL.

🧠 New to programming or neuroscience?
Try CodingWithNeuralActivity, a beginner's tutorial made for BrainCamp Kosovo 2019.

Just want to focus on your own projects?
pip install focus-time -> focus

             

📫 Feel free to reach out with any questions! [email protected]

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  1. focus-time focus-time Public

    A command-line application to help you focus for a set amount of time

    Python 1

  2. behavior-opto-analysis behavior-opto-analysis Public

    A package for analyzing free-moving behavioral data during optogenetics experiments.

    Python

  3. brainglobe/slicereg brainglobe/slicereg Public archive

    A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

    Python 37 13

  4. cortex-lab/allenCCF cortex-lab/allenCCF Public

    Tools to work with Allen Inst CCF data in matlab

    MATLAB 124 78

  5. Euclidean_Gridworld_RL Euclidean_Gridworld_RL Public

    Train model-free RL agents in a Euclidean gridworld

    Python 1 1

  6. CodingWithNeuralActivity CodingWithNeuralActivity Public

    Learning to manipulate neural activity data using python

    Python