Dockerfile update

pirl-unc · Nov 4, 2024 · 87c064e · 87c064e
1 parent b376694
commit 87c064e
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -76,9 +76,9 @@ ENV DEBIAN_FRONTEND=noninteractive
 #RUN rm -rf /var/lib/{apt,dpkg,cache,log}
 
 USER root
-RUN apt-get update && \
-    apt-get install -y openjdk-11-jre-headless r-base curl && \
-    apt-get clean;
+#RUN apt-get update && \
+#    apt-get install -y openjdk-11-jre-headless r-base curl && \
+#    apt-get clean;
 
 RUN Rscript -e "install.packages('BiocManager', dependencies=TRUE, repos='http://cran.rstudio.com/')" && \
     Rscript -e "BiocManager::install(c('GenomicFeatures', 'Biostrings', 'biomaRt', 'rtracklayer', 'stringr', 'ggplot2', 'patchwork', 'cowplot'))"

diff --git a/env.yaml b/env.yaml
@@ -10,3 +10,4 @@ dependencies:
     - genion=1.0.1
     - minimap2=2.28
     - samtools
+    - openjdk=11