changed default alkalinity to prognostic in main setup only #465
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This is a basic workflow to help you get started with Actions | |
| name: ersem | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| schedule: | |
| - cron: '0 9 * * 1' | |
| jobs: | |
| build-pyfabm-ersem-debian: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing PyFABM-ERSEM dependences | |
| run: ./github-actions/pyfabm-ersem/pyfabm-ersem-dep-debian.sh | |
| - name: Building and installing PyFABM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/pyfabm-ersem/pyfabm-ersem-build.sh $BRANCH | |
| - name: Running pyfabm tutorial | |
| run: | | |
| python -m pip install matplotlib | |
| python github-actions/pyfabm-ersem/pyfabm_tut.py | |
| - name: Running pyfabm systests | |
| run: | | |
| python -m pip install pytest | |
| pytest github-actions/pyfabm-ersem | |
| build-gotm-fabm-ersem-debian: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing GOTM-FABM-ERSEM dependences | |
| run: ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-dep-debian.sh | |
| - name: Building and installing GOTM-FABM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-build.sh -b $BRANCH -f '-DCMAKE_Fortran_FLAGS="-fcheck=all"' | |
| - name: Running tutorial | |
| run: | | |
| ./github-actions/gotm-fabm-ersem/gotm-tut-config-setup.sh | |
| sudo apt install libnetcdff-dev | |
| python -m pip install matplotlib netCDF4 | |
| python github-actions/gotm-fabm-ersem/gotm_tut.py -p ersem-setups/L4/L4_time_daily_mean_16.06.nc | |
| - name: Running gotm tests | |
| run: | | |
| python -m pip install pytest | |
| pytest github-actions/gotm-fabm-ersem/test_state_variables.py github-actions/gotm-fabm-ersem/test_gotm.py | |
| build-fabm0d-gotm-ersem-debian: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing FABM0d-GOTM-ERSEM dependences | |
| run: ./github-actions/fabm0d-gotm-ersem/fabm0d-gotm-ersem-dep-debian.sh | |
| - name: Building and installing FABM0d-GOTM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/fabm0d-gotm-ersem/fabm0d-gotm-ersem-build.sh -b $BRANCH -f '-DCMAKE_Fortran_FLAGS="-fcheck=all"' | |
| - name: Running tutorial | |
| run: | | |
| ./github-actions/fabm0d-gotm-ersem/aquarium-tut-config-setup.sh | |
| sudo apt install libnetcdff-dev | |
| python -m pip install matplotlib netCDF4 | |
| python github-actions/fabm0d-gotm-ersem/aquarium_tut.py -p ersem-setups/0d-aquarium/output.nc | |
| - name: Running aquarium systests | |
| run: | | |
| python -m pip install pytest | |
| pytest github-actions/fabm0d-gotm-ersem | |
| build-gotm-profilling: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing GOTM-FABM-ERSEM dependences | |
| run: ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-dep-debian.sh | |
| - name: Building and installing GOTM-FABM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-build.sh -f "-DCMAKE_Fortran_FLAGS="-pg -fcheck=all"" -b $BRANCH | |
| - name: Running config | |
| run: | | |
| ./github-actions/gotm-fabm-ersem/gotm-profiling.sh | |
| - name: Running gotm profilling | |
| run: | | |
| python -m pip install pytest pandas | |
| pytest -s github-actions/gotm-fabm-ersem/test_profiling.py |