Merge pull request #132 from pmlmodelling/112_POM_units #431
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| # This is a basic workflow to help you get started with Actions | |
| name: ersem | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| schedule: | |
| - cron: '0 9 * * 1' | |
| jobs: | |
| build-pyfabm-ersem-debian: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing PyFABM-ERSEM dependences | |
| run: ./github-actions/pyfabm-ersem/pyfabm-ersem-dep-debian.sh | |
| - name: Building and installing PyFABM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/pyfabm-ersem/pyfabm-ersem-build.sh $BRANCH | |
| - name: Running pyfabm tutorial | |
| run: | | |
| python -m pip install matplotlib | |
| python github-actions/pyfabm-ersem/pyfabm_tut.py | |
| - name: Running pyfabm systests | |
| run: | | |
| python -m pip install pytest | |
| pytest github-actions/pyfabm-ersem | |
| build-gotm-fabm-ersem-debian: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing GOTM-FABM-ERSEM dependences | |
| run: ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-dep-debian.sh | |
| - name: Building and installing GOTM-FABM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-build.sh -b $BRANCH | |
| - name: Running tutorial | |
| run: | | |
| ./github-actions/gotm-fabm-ersem/gotm-tut-config-setup.sh | |
| sudo apt install libnetcdff-dev | |
| python -m pip install matplotlib netCDF4 | |
| python github-actions/gotm-fabm-ersem/gotm_tut.py -p ersem-setups/L4/L4_time_daily_mean_16.06.nc | |
| - name: Running gotm tests | |
| run: | | |
| python -m pip install pytest | |
| pytest github-actions/gotm-fabm-ersem/test_state_variables.py github-actions/gotm-fabm-ersem/test_gotm.py | |
| build-fabm0d-gotm-ersem-debian: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing FABM0d-GOTM-ERSEM dependences | |
| run: ./github-actions/fabm0d-gotm-ersem/fabm0d-gotm-ersem-dep-debian.sh | |
| - name: Building and installing FABM0d-GOTM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/fabm0d-gotm-ersem/fabm0d-gotm-ersem-build.sh -b $BRANCH | |
| - name: Running tutorial | |
| run: | | |
| ./github-actions/fabm0d-gotm-ersem/aquarium-tut-config-setup.sh | |
| sudo apt install libnetcdff-dev | |
| python -m pip install matplotlib netCDF4 | |
| python github-actions/fabm0d-gotm-ersem/aquarium_tut.py -p ersem-setups/0d-aquarium/output.nc | |
| - name: Running aquarium systests | |
| run: | | |
| python -m pip install pytest | |
| pytest github-actions/fabm0d-gotm-ersem | |
| build-gotm-profilling: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Installing GOTM-FABM-ERSEM dependences | |
| run: ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-dep-debian.sh | |
| - name: Building and installing GOTM-FABM-ERSEM | |
| run: | | |
| BRANCH=${{ github.head_ref }} | |
| ./github-actions/gotm-fabm-ersem/gotm-fabm-ersem-build.sh -f "-DCMAKE_Fortran_FLAGS="-pg"" -b $BRANCH | |
| - name: Running config | |
| run: | | |
| ./github-actions/gotm-fabm-ersem/gotm-profiling.sh | |
| - name: Running gotm profilling | |
| run: | | |
| python -m pip install pytest pandas | |
| pytest -s github-actions/gotm-fabm-ersem/test_profiling.py |