Clean up properly

pni-lab · Feb 29, 2024 · 24292ce · 24292ce
1 parent c2e549c
commit 24292ce
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/scripts/cluster-pipeline-executor.sh b/scripts/cluster-pipeline-executor.sh
@@ -167,6 +167,8 @@ rm -rf "\${subject_data_in}"
 rm -rf "\${subject_data_out}"
 rm -rf "\${subject_tmp}"
 rm -rf "\${subject_apptainer_cache_dir}"
+rm -rf "${TMP_PUMI}/apptainer_image/${subject_id}"
+rm -rf "\${pumi_dir}"
 
 echo "*************************************************************"
 echo "Ended on \$(hostname) at \$(date +"%T")"