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Improve cluster script & HCP pipeline #187

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Mar 7, 2024
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khoffschlag committed Feb 10, 2024

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commit 22238bcc1386770351ede640dd076d4028fa4ff2
4 changes: 3 additions & 1 deletion PUMI/pipelines/func/deconfound.py
Original file line number Diff line number Diff line change
@@ -106,9 +106,11 @@ def fieldmap_correction(wf, encoding_direction=['x-', 'x'], readout_times=[0.082
Sinking:
- 4d distortion corrected image.

For more information regarding the parameters:

For more information:
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/topup/ExampleTopupFollowedByApplytopup
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/topup/Faq#How_do_I_know_what_phase-encode_vectors_to_put_into_my_--datain_text_file.3F
https://www.humanconnectome.org/storage/app/media/documentation/s1200/HCP_S1200_Release_Appendix_I.pdf

"""