STYLE: Convert tabs to spaces

pnlbwh · Jan 13, 2023 · 3a52fbb · 3a52fbb
1 parent 465a87f
commit 3a52fbb
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Showing 12 changed files with 85 additions and 77 deletions.
diff --git a/CMake/ITKSetStandardCompilerFlags.cmake b/CMake/ITKSetStandardCompilerFlags.cmake
@@ -25,21 +25,21 @@ include(CheckCXXCompilerFlag)
 include(CheckCCompilerFlag)
 
 if(CMAKE_VERSION VERSION_GREATER_EQUAL 3.14.0)
-	cmake_policy(SET CMP0083 NEW)
-	include(CheckPIESupported)
-	check_pie_supported()
+  cmake_policy(SET CMP0083 NEW)
+  include(CheckPIESupported)
+  check_pie_supported()
 endif()
 
 function(check_c_compiler_flags c_flag_var)
   set(local_c_flags "")
   set(flag_list "${ARGN}")
   foreach(flag IN LISTS flag_list)
     string(REPLACE "=" "_" flag_var ${flag} )
-	if(CMAKE_VERSION VERSION_LESS 2.8.9)
-		ITK_CHECK_C_COMPILER_FLAG(${flag} C_HAS_WARNING${flag_var})
-	else()
-		check_c_compiler_flag(${flag} C_HAS_WARNING${flag_var})
-	endif()
+    if(CMAKE_VERSION VERSION_LESS 2.8.9)
+      ITK_CHECK_C_COMPILER_FLAG(${flag} C_HAS_WARNING${flag_var})
+    else()
+      check_c_compiler_flag(${flag} C_HAS_WARNING${flag_var})
+    endif()
     if(${C_HAS_WARNING${flag_var}})
       set(local_c_flags "${local_c_flags} ${flag}")
     endif()
@@ -52,11 +52,11 @@ function(check_cxx_compiler_flags cxx_flag_var)
   set(flag_list "${ARGN}")
   foreach(flag IN LISTS flag_list)
     string(REPLACE "=" "_" flag_var ${flag} )
-	if(CMAKE_VERSION VERSION_LESS 2.8.9)
-		ITK_CHECK_CXX_COMPILER_FLAG(${flag} CXX_HAS_WARNING${flag_var})
-	else()
-		check_cxx_compiler_flag(${flag} CXX_HAS_WARNING${flag_var})
-	endif()
+    if(CMAKE_VERSION VERSION_LESS 2.8.9)
+      ITK_CHECK_CXX_COMPILER_FLAG(${flag} CXX_HAS_WARNING${flag_var})
+    else()
+      check_cxx_compiler_flag(${flag} CXX_HAS_WARNING${flag_var})
+    endif()
     if(${CXX_HAS_WARNING${flag_var}})
       set(local_cxx_flags "${local_cxx_flags} ${flag}")
     endif()
@@ -209,7 +209,7 @@ macro(check_compiler_platform_flags)
              -D_CRT_TIME_FUNCTIONS_NO_DEPRECATE
              -D_CRT_VCCLRIT_NO_DEPRECATE
              -D_SCL_SECURE_NO_DEPRECATE
-             )
+           )
          endif()
          # With MS compilers on Win64, we need the /bigobj switch, else generated
          # code results in objects with number of sections exceeding object file
@@ -243,11 +243,11 @@ macro(check_compiler_platform_flags)
       # if CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS is on, then
       # BUILD_SHARED_LIBS works as it would on other systems
       if(NOT CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS)
-      if(BUILD_SHARED_LIBS)
-        set(ITK_LIBRARY_BUILD_TYPE "SHARED")
-      else()
-        set(ITK_LIBRARY_BUILD_TYPE "STATIC")
-      endif()
+        if(BUILD_SHARED_LIBS)
+          set(ITK_LIBRARY_BUILD_TYPE "SHARED")
+        else()
+          set(ITK_LIBRARY_BUILD_TYPE "STATIC")
+        endif()
         # turn off BUILD_SHARED_LIBS as ITK_LIBRARY_BUILD_TYPE
         # is used on the libraries that have markup.
       set(BUILD_SHARED_LIBS OFF)
@@ -342,7 +342,6 @@ macro(check_compiler_platform_flags)
      endif()
   endif()
 
-
   # mingw thread support
   if(MINGW)
     set(ITK_REQUIRED_CXX_FLAGS "${ITK_REQUIRED_CXX_FLAGS} -mthreads")
@@ -397,7 +396,6 @@ mark_as_advanced(${PROJECT_NAME}_C_WARNING_FLAGS)
 unset(C_WARNING_FLAGS)
 unset(CXX_WARNING_FLAGS)
 
-
 if(NOT ${PROJECT_NAME}_C_OPTIMIZATION_FLAGS OR NOT ${PROJECT_NAME}_CXX_OPTIMIZATION_FLAGS ) # Only check once if not explicitly set on command line
   #-----------------------------------------------------------------------------
   #Check the set of warning flags the compiler supports

diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -81,7 +81,7 @@ mark_as_advanced(ADDITIONAL_CXX_FLAGS)
 #-----------------------------------------------------------------------------
 # Required by Slicer extension build system for reasons. See
 #    https://github.com/Slicer/Slicer/commit/b160ec13f276a86306513954ef8b08a5332afc2e
-  set(CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${CMAKE_BINARY_DIR};${EXTENSION_NAME};RuntimeLibraries;/")
+set(CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${CMAKE_BINARY_DIR};${EXTENSION_NAME};RuntimeLibraries;/")
 
 #-----------------------------------------------------------------------------
 # Superbuild script

diff --git a/SuperBuild/External_Boost.cmake b/SuperBuild/External_Boost.cmake
@@ -61,44 +61,44 @@ if(NOT ( DEFINED "USE_SYSTEM_${extProjName}" AND "${USE_SYSTEM_${extProjName}}"
 
   if(MSVC)
     if(MSVC_VERSION GREATER_EQUAL 1400 AND MSVC_VERSION LESS 1500)
-	  list(APPEND Boost_b2_Command toolset=msvc-8.0)
+      list(APPEND Boost_b2_Command toolset=msvc-8.0)
     elseif(MSVC_VERSION GREATER_EQUAL 1500 AND MSVC_VERSION LESS 1600)
-	  list(APPEND Boost_b2_Command toolset=msvc-9.0)
+      list(APPEND Boost_b2_Command toolset=msvc-9.0)
     elseif(MSVC_VERSION GREATER_EQUAL 1600 AND MSVC_VERSION LESS 1700)
-	  list(APPEND Boost_b2_Command toolset=msvc-10.0)
+      list(APPEND Boost_b2_Command toolset=msvc-10.0)
     elseif(MSVC_VERSION GREATER_EQUAL 1700 AND MSVC_VERSION LESS 1800)
-	  list(APPEND Boost_b2_Command toolset=msvc-11.0)
+      list(APPEND Boost_b2_Command toolset=msvc-11.0)
     elseif(MSVC_VERSION GREATER_EQUAL 1800 AND MSVC_VERSION LESS 1900)
-	  list(APPEND Boost_b2_Command toolset=msvc-12.0)
+      list(APPEND Boost_b2_Command toolset=msvc-12.0)
     elseif(MSVC_VERSION GREATER_EQUAL 1900 AND MSVC_VERSION LESS 1910)
-	  list(APPEND Boost_b2_Command toolset=msvc-14.0)
+     list(APPEND Boost_b2_Command toolset=msvc-14.0)
     elseif(MSVC_VERSION GREATER_EQUAL 1910 AND MSVC_VERSION LESS 1920)
-	  list(APPEND Boost_b2_Command toolset=msvc-14.1)
+      list(APPEND Boost_b2_Command toolset=msvc-14.1)
     elseif(MSVC_VERSION GREATER_EQUAL 1920 AND MSVC_VERSION LESS 1927)
-	  list(APPEND Boost_b2_Command toolset=msvc-14.2)
-    else()	
-	  message(FATAL_ERROR "Unknown MSVC compiler version [${MSVC_VERSION}]")
-	endif()
+      list(APPEND Boost_b2_Command toolset=msvc-14.2)
+    else()
+      message(FATAL_ERROR "Unknown MSVC compiler version [${MSVC_VERSION}]")
+    endif()
   endif()
 
   if(XCODE_VERSION OR (CMAKE_CXX_COMPILER_ID MATCHES "Clang"))
     list(APPEND Boost_b2_Command toolset=clang)
   elseif(CMAKE_COMPILER_IS_GNUCXX)
     list(APPEND Boost_b2_Command toolset=gcc)
   endif()
-	
+
   if(ENV{CC})
     # CMake apprarently puts the full path of the compiler into CC
     # The user might specify a non-default gcc compiler through ENV
-	message(STATUS "ENV{CC}=$ENV{CC}")
-	get_filename_component( gccToolset "$ENV{CC}" NAME )
-
-	# see: https://svn.boost.org/trac/boost/ticket/5917
-	string(TOLOWER ${gccToolset} gccToolset)
-	if(gccToolset STREQUAL "cc")
-	  set(gccToolset "gcc")
-	endif()
-	list(APPEND Boost_b2_Command toolset=${gccToolset})
+  message(STATUS "ENV{CC}=$ENV{CC}")
+  get_filename_component( gccToolset "$ENV{CC}" NAME )
+
+  # see: https://svn.boost.org/trac/boost/ticket/5917
+  string(TOLOWER ${gccToolset} gccToolset)
+  if(gccToolset STREQUAL "cc")
+    set(gccToolset "gcc")
+  endif()
+  list(APPEND Boost_b2_Command toolset=${gccToolset})
   endif()
 
   if(CMAKE_SIZEOF_VOID_P EQUAL 8)
@@ -107,16 +107,26 @@ if(NOT ( DEFINED "USE_SYSTEM_${extProjName}" AND "${USE_SYSTEM_${extProjName}}"
     set(Boost_address_model 32)
   endif()
 
- ExternalProject_Add(${proj}
-	${${proj}_EP_ARGS}
-	BUILD_IN_SOURCE 1
-	URL ${Boost_url}
-	URL_MD5 ${Boost_md5}
-	UPDATE_COMMAND ""
-	CONFIGURE_COMMAND ${Boost_Bootstrap_Command} --prefix=${Boost_Install_Dir}/lib
-	BUILD_COMMAND ${Boost_b2_Command} install -j8 --prefix=${Boost_Install_Dir} --with-thread --with-filesystem --with-system --with-date_time --with-program_options  --with-atomic  address-model=${Boost_address_model} link=static
-	INSTALL_COMMAND ""
-	)
+  ExternalProject_Add(${proj}
+    ${${proj}_EP_ARGS}
+    BUILD_IN_SOURCE 1
+    URL ${Boost_url}
+    URL_MD5 ${Boost_md5}
+    UPDATE_COMMAND ""
+    CONFIGURE_COMMAND ${Boost_Bootstrap_Command}
+      --prefix=${Boost_Install_Dir}/lib
+    BUILD_COMMAND ${Boost_b2_Command} install -j8
+      --prefix=${Boost_Install_Dir}
+      --with-thread
+      --with-filesystem
+      --with-system
+      --with-date_time
+      --with-program_options
+      --with-atomic
+      address-model=${Boost_address_model}
+      link=static
+    INSTALL_COMMAND ""
+    )
 
   if(NOT WIN32)
     set(BOOST_ROOT        ${Boost_Install_Dir})

diff --git a/SuperBuild/External_ITK.cmake b/SuperBuild/External_ITK.cmake
@@ -49,7 +49,7 @@ if(NOT DEFINED ITK_DIR AND NOT ${CMAKE_PROJECT_NAME}_USE_SYSTEM_${proj})
     SOURCE_DIR ${EP_SOURCE_DIR}
     BINARY_DIR ${EP_BINARY_DIR}
     CMAKE_CACHE_ARGS
-	  -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
+      -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
       -DCMAKE_CXX_COMPILER:FILEPATH=${CMAKE_CXX_COMPILER}
       -DCMAKE_CXX_FLAGS:STRING=${ep_common_cxx_flags}
       -DCMAKE_C_COMPILER:FILEPATH=${CMAKE_C_COMPILER}

diff --git a/SuperBuild/External_SlicerExecutionModel.cmake b/SuperBuild/External_SlicerExecutionModel.cmake
@@ -56,7 +56,7 @@ if(NOT DEFINED SlicerExecutionModel_DIR AND NOT ${CMAKE_PROJECT_NAME}_USE_SYSTEM
     CMAKE_ARGS -Wno-dev --no-warn-unused-cli
     CMAKE_CACHE_ARGS
       ${COMMON_EXTERNAL_PROJECT_ARGS}
-	  -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
+      -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
       -DBUILD_TESTING:BOOL=OFF
       -DITK_DIR:PATH=${ITK_DIR}
       -DSlicerExecutionModel_LIBRARY_PROPERTIES:STRING=${Slicer_LIBRARY_PROPERTIES}

diff --git a/SuperBuild/External_VTK.cmake b/SuperBuild/External_VTK.cmake
@@ -27,9 +27,9 @@ endif()
 # For MinGW for case of compilation failure cause of 'too many sections' error
 if (CMAKE_SIZEOF_VOID_P EQUAL 8)
   if(MINGW)
-	set(ep_common_cxx_flags "${ep_common_cxx_flags} -Wa,-mbig-obj")
+    set(ep_common_cxx_flags "${ep_common_cxx_flags} -Wa,-mbig-obj")
   elseif(MSVC)
-	set(ep_common_cxx_flags "${ep_common_cxx_flags} /bigobj")
+    set(ep_common_cxx_flags "${ep_common_cxx_flags} /bigobj")
   endif()
 endif()
 

diff --git a/SuperBuild/External_zlib.cmake b/SuperBuild/External_zlib.cmake
@@ -61,11 +61,11 @@ if(NOT DEFINED zlib_DIR AND NOT ${CMAKE_PROJECT_NAME}_USE_SYSTEM_${proj})
   set(ZLIB_ROOT ${zlib_DIR})
   set(ZLIB_INCLUDE_DIR ${zlib_DIR}/include)
   if(WIN32)
-	if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU") #to make compatible with msys2 gcc build
-		set(ZLIB_LIBRARY ${zlib_DIR}/lib/libzlib.a)
-	else()
-		set(ZLIB_LIBRARY ${zlib_DIR}/lib/zlib.lib)
-	endif()
+    if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU") #to make compatible with msys2 gcc build
+      set(ZLIB_LIBRARY ${zlib_DIR}/lib/libzlib.a)
+    else()
+      set(ZLIB_LIBRARY ${zlib_DIR}/lib/zlib.lib)
+    endif()
   else()
     set(ZLIB_LIBRARY ${zlib_DIR}/lib/libzlib.a)
   endif()

diff --git a/UKFTractography.cmake b/UKFTractography.cmake
@@ -77,12 +77,12 @@ endif()
 
 #-----------------------------------------------------------------------------
 include_directories(${CMAKE_CURRENT_SOURCE_DIR}/common)
-set(UKF_STATIC)
-if(NOT BUILD_SHARED_LIBS)
-    set(UKF_STATIC 1)
-    if(WIN32)
-        add_definitions("-DUKF_STATIC")
-    endif()
+set(UKF_STATIC)
+if(NOT BUILD_SHARED_LIBS)
+  set(UKF_STATIC 1)
+  if(WIN32)
+    add_definitions("-DUKF_STATIC")
+  endif()
 endif()
 add_subdirectory(ukf)
 add_subdirectory(UKFTractography)

diff --git a/ukf/NrrdData.cc b/ukf/NrrdData.cc
@@ -244,9 +244,9 @@ void NrrdData::GetSeeds(const std::vector<int>& labels,
     std::vector<int>::const_iterator cit;
 
     // Go through the volume.
-	size_t nx = _seed_nrrd->axis[2].size;
-	size_t ny = _seed_nrrd->axis[1].size;
-	size_t nz = _seed_nrrd->axis[0].size;
+    size_t nx = _seed_nrrd->axis[2].size;
+    size_t ny = _seed_nrrd->axis[1].size;
+    size_t nz = _seed_nrrd->axis[0].size;
     assert(_seed_data);
 
     if ( !(nx == _dim[0] && ny == _dim[1] && nz == _dim[2]) )
@@ -263,7 +263,7 @@ void NrrdData::GetSeeds(const std::vector<int>& labels,
           for( cit = labels.begin(); cit != labels.end(); ++cit )
             {
             int value = 0;
-			size_t index = ny * nz * i + nz * j + k;
+            size_t index = ny * nz * i + nz * j + k;
 
             switch( _seed_data_type )
               {

diff --git a/ukf/cli.cc b/ukf/cli.cc
@@ -80,11 +80,11 @@ int ukf_parse_cli(int argc, char** argv, UKFSettings& s)
   // HANDLE ERRORNOUS INPUT
   if (dwiFile.empty() || maskFile.empty() || tracts.empty()) {
     std::cout << "Error! Must indicate DWI data, mask and tracts output files!" << std::endl << std::endl ;
-    return 1 ;	//This is to indicate that the module returns with error
+    return 1 ;  //This is to indicate that the module returns with error
   }
 
   if (numTensor == 1) {
-    tractsWithSecondTensor.clear() ;	//Reassure the string is empty
+    tractsWithSecondTensor.clear() ;  //Reassure the string is empty
   }
 
   if (l_maxHalfFiberLength <= 0) {
@@ -126,7 +126,7 @@ int ukf_parse_cli(int argc, char** argv, UKFSettings& s)
   }
 
   if (labels.size() == 0) {
-    labels.push_back(1) ;	//Default to use label 1
+    labels.push_back(1) ; //Default to use label 1
   }
 
   if (l_stoppingFA == 0.15) {

diff --git a/ukf/thread.h b/ukf/thread.h
@@ -30,7 +30,7 @@ typedef std::vector<WorkList> WorkDistribution;
 // ~ProgressThread() ;
 // } ;
 
-// const int PROGRESS_REPORT_INTERVAL = 2 ;	//Report progress once per 2 seconds
+// const int PROGRESS_REPORT_INTERVAL = 2 ; //Report progress once per 2 seconds
 
 WorkDistribution GenerateWorkDistribution(const int num_threads, const int total_num_works);
 

diff --git a/ukf/tractography.cc b/ukf/tractography.cc
@@ -405,7 +405,7 @@ void Tractography::Init(std::vector<SeedPointInfo>& seed_infos)
     }
 
   if (! (seeds.size() > 0)) {
-	std::cout << "No matching label ROI seeds found! Please verify label selection.";
+    std::cout << "No matching label ROI seeds found! Please verify label selection.";
     throw;
   }
-Original file line number
+Diff line change
@@ Expand Up @@
         }
       if (! (seeds.size() > 0)) {
-    	std::cout << "No matching label ROI seeds found! Please verify label selection.";
+        std::cout << "No matching label ROI seeds found! Please verify label selection.";
         throw;
       }
@@ Expand Down @@