Model updated with corrected chemical formulas of the metabolites and… #3
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… code used to do this
| output_model_path = os.path.join(_file_path, output_model_name) | ||
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| model = read_sbml_model("csc009.xml") | ||
| #model = read_sbml_model("csc031.xml") |
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These extra fields can be removed as this model is only concerned with the uncommented model=.
| metabolite_to_change.formula = metabolites_formula[i] | ||
| return model | ||
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| #def update_2(model): |
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You can go ahead and remove this commented out update2(model), we can re-add it when it becomes relevant, but let's just keep the necessary code for now.
| @@ -0,0 +1,74 @@ | |||
| #!/usr/bin/env python | |||
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Remove these artifacts (L1-L4) that came from converting a jupyter cell to py script, just start the top of the script with a description of the file:
you can use:
https://github.com/pnnl-predictive-phenomics/SElon-GEM/blob/main/syn_elong/model_changes.py
as an example
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Could you also move these files from the root (the main directory) to the directory labeled |
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… code used to do this