* Add initial poetry setup guidance to the README

* Update CHANGELOG "unreleased" with issue 85

* make note in README of `-E harmony` install option for tests

* Update CHANGELOG.md

Co-authored-by: dkaufma3 <[email protected]>

# Conflicts:
#	CHANGELOG.md
#	cmr/uat_associations.txt
#	pyproject.toml

* Add extra line of logic to catch timedelta time cases

* Updated Changelog

* Add logic to handle time attributes for he5 time converted files

* Linted code

* Add extra line of logic to catch timedelta time cases

* Updated Changelog

* Add logic to handle time attributes for he5 time converted files

* Linted code

* Added extra logic for compute time vars for cases without any variables

* change back chunking

* Update Changelog

* Add extra line of logic to catch timedelta time cases

* Updated Changelog

* Add logic to handle time attributes for he5 time converted files

* Linted code

* Fix for ncdataset rename deprication - test writing to follow

* Remove unnecessary comments, changing to issue 119

* Added test and linted for duplicate dimension name change

* Updated Changelog.md

# Conflicts:
#	CHANGELOG.md
#	pyproject.toml

* fix way xarray open granules that have  as a time unit

* fix pylint

* change function to use original function if can parse only change units if we can not parse

* make xarray override into its own function

* add test for override_decode_cf_datetime function

* disable pyline one line instead of global

* Update podaac/subsetter/subset.py

Co-authored-by: Frank Greguska <[email protected]>

* Add variable leading slash flexibility

* Add tests back to test file

* changelog added and updated

* Update podaac/subsetter/subset.py

Co-authored-by: Frank Greguska <[email protected]>

* update Syntax

* resolve conflict

Co-authored-by: nlensse1 <[email protected]>
Co-authored-by: Frank Greguska <[email protected]>

…datasets (#135)

* Update tests to use parameterized pytest. Some tests failing on new TEMPO test dataset

* Replace / in all var names if the dataset is grouped

* perform flattening as necessary in test suite (#130)

* move methods for flattening netcdf and hdf group structures to separate module

* feature/PODAAC-5065 (#129)

* fix way xarray open granules that have  as a time unit

* fix pylint

* change function to use original function if can parse only change units if we can not parse

* make xarray override into its own function

* add test for override_decode_cf_datetime function

* disable pyline one line instead of global

* Update podaac/subsetter/subset.py

Co-authored-by: Frank Greguska <[email protected]>

* add missing parameter to docstring

* typo in docstring

* extract netcdf opening procedure from beginning of `subset() into a new function

* update tests to use netcdf opening wrapper function, to prevent errors with tempo data

* /version 2.3.0-alpha.5

* update `test_specified_variables()` to use netcdf opening wrapper function in multiple places

to prevent errors with tempo data

* cosmetic

* clean up comment and use 'decode_times'=True for test

* feature/issue 126 (#131)

* Add variable leading slash flexibility

* Add tests back to test file

* changelog added and updated

* Update podaac/subsetter/subset.py

Co-authored-by: Frank Greguska <[email protected]>

* update Syntax

* resolve conflict

Co-authored-by: nlensse1 <[email protected]>
Co-authored-by: Frank Greguska <[email protected]>

* /version 2.3.0-alpha.6

* Update build-pipeline.yml

* /version 2.3.0-alpha.7

* Merge changes from origin/develop

* Merge changes from issues/127

Co-authored-by: sliu008 <[email protected]>
Co-authored-by: Frank Greguska <[email protected]>
Co-authored-by: l2ss-py bot <[email protected]>
Co-authored-by: Nick Lenssen <[email protected]>
Co-authored-by: nlensse1 <[email protected]>

* Run verification on issue branches

* Updated changelog

* add module docstring

* fix import statements

* fix import statements

* Fix tests

Co-authored-by: Daniel Kaufman <[email protected]>
Co-authored-by: sliu008 <[email protected]>
Co-authored-by: l2ss-py bot <[email protected]>
Co-authored-by: Nick Lenssen <[email protected]>
Co-authored-by: nlensse1 <[email protected]>
Co-authored-by: danielfromearth <[email protected]>

* added snyk blocking step to the github build workflow

* added snyk blocking step to the github build workflow

* added snyk blocking step to the github build workflow

* added snyk blocking step to the github build workflow

* added snyk blocking step to the github build workflow

Co-authored-by: Jonathan M Smolenski <[email protected]>

* typo

* rearrange docstring parameters to match function signature

* add "TODO" comments for docstring or typing components that aren't quite matching

* add type annotations for dimension_cleanup.py

* add type annotations for group_handling.py

* add type annotations for xarray_enhancements.py

* revert 't[T]uple' annotation to python=3.8 using typing import

* revert 'l[L]ist' annotation to python=3.8 using typing import

* revert 'l[L]ist' annotation to python=3.8 using typing import

* add type annotations for subset.py

* add type annotations for subset_harmony.py

* add type annotations for run_subsetter.py

* add further type annotations for subset.py