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Generating GO‐CAM data files

Kim Rutherford edited this page Jun 26, 2024 · 1 revision

The GO-CAM data is loaded from:

  • pombe-embl/supporting_files/production_gocam_id_mapping.tsv - gene ID to GO-CAM ID mapping file
  • pombe-embl/supporting_files/production_gocam_term_id_mapping.tsv - process term ID to GO-CAM ID mapping file

These are created from the Noctua pombe GPAD file and the GO API.

In the pombase-chado directory:

./etc/generate_gocam_data_files.pl $POMBE_EMBL/supporting_files/production_gocam_id_mapping.tsv $POMBE_EMBL/supporting_files/production_gocam_term_id_mapping.tsv          

Then svn commit the files.