Skip to content

Commit

Permalink
closes #2017
Browse files Browse the repository at this point in the history
  • Loading branch information
manulera committed Sep 25, 2023
1 parent bafee1e commit 8aad7c4
Show file tree
Hide file tree
Showing 2 changed files with 30 additions and 0 deletions.
15 changes: 15 additions & 0 deletions src/docs/status/gene-coordinate-changes-RNA.PomBase.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,18 @@
### RNA gene coordinate changes

The table below contains all changes to sequence coordinates in RNA genes. Each pair of rows corresponds to a change, with columns corresponding to:

* **Date:** date of the change.
* **Systematic id:** systematic id of the gene affected.
* **Primary name:** primary name of the gene affected, if it exists.
* **Before / after change:** if the value is `before`, the value of `Coordinates` corresponds to coordinates of the CDS before the change. If the value is `after`, the value of `Coordinates` corresponds to coordinates of the CDS after the change.
* **Coordinates:** see above.
* **Comment:** a comment by PomBase curators might be associated with a change.
* **Reference:** a reference (e.g. a PubMed ID) might be associated with a change.

For a list of all changes in the genome (including protein coding genes) in a similar format see:

* [https://github.com/pombase/genome_changelog/blob/master/results/all_coordinate_changes_file_comments_no_type_change.tsv](https://github.com/pombase/genome_changelog/blob/master/results/all_coordinate_changes_file_comments_no_type_change.tsv) for changes after 23-08-2011.
* [https://github.com/pombase/genome_changelog/blob/master/results/pre_svn_coordinate_changes_file_comments_no_type_change.tsv](https://github.com/pombase/genome_changelog/blob/master/results/pre_svn_coordinate_changes_file_comments_no_type_change.tsv) for previous changes.

%%table file=gene-coordinate-change-data-RNA.tsv
15 changes: 15 additions & 0 deletions src/docs/status/gene-coordinate-changes-protein-coding.PomBase.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,18 @@
### Protein coding gene coordinate changes

The table below contains all changes to coding sequence (CDS) coordinates in protein coding genes. Each pair of rows corresponds to a change, with columns corresponding to:

* **Date:** date of the change.
* **Systematic id:** systematic id of the gene affected.
* **Primary name:** primary name of the gene affected, if it exists.
* **Before / after change:** if the value is `before`, the value of `Coordinates` corresponds to coordinates of the CDS before the change. If the value is `after`, the value of `Coordinates` corresponds to coordinates of the CDS after the change.
* **Coordinates:** see above.
* **Comment:** a comment by PomBase curators might be associated with a change.
* **Reference:** a reference (e.g. a PubMed ID) might be associated with a change.

For a list of all changes in the genome (including UTRs of coding genes and RNA genes) in a similar format see:

* [https://github.com/pombase/genome_changelog/blob/master/results/all_coordinate_changes_file_comments_no_type_change.tsv](https://github.com/pombase/genome_changelog/blob/master/results/all_coordinate_changes_file_comments_no_type_change.tsv) for changes after 23-08-2011.
* [https://github.com/pombase/genome_changelog/blob/master/results/pre_svn_coordinate_changes_file_comments_no_type_change.tsv](https://github.com/pombase/genome_changelog/blob/master/results/pre_svn_coordinate_changes_file_comments_no_type_change.tsv) for previous changes.

%%table file=gene-coordinate-change-data-protein-coding.tsv

0 comments on commit 8aad7c4

Please sign in to comment.