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Add package: 2024_Childebayeva_NorthernEurasian #188

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17 changes: 17 additions & 0 deletions packages/2024_Childebayeva_NorthernEurasian/2024_Childebayeva_NorthernEurasian.ssf
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poseidon_IDs udg library_built notes run_accession study_accession sample_accession sample_alias secondary_sample_accession first_public last_updated instrument_model library_layout library_source instrument_platform library_name library_strategy fastq_ftp fastq_aspera fastq_bytes fastq_md5 read_count submitted_ftp submitted_md5
BOO001 half ds n/a ERR13137433 PRJEB74730 SAMEA5043928 BOO001 ERS2855662 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA BOO001.A0101_rmdup WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/033/ERR13137433/ERR13137433.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/033/ERR13137433/ERR13137433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/033/ERR13137433/ERR13137433_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/033/ERR13137433/ERR13137433.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/033/ERR13137433/ERR13137433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/033/ERR13137433/ERR13137433_2.fastq.gz 5641372995;4167185;4547198 84acd2734fdc09f9d7b6ffeb7d0edf85;b3521921580b755f7467ba0a5fea193e;12fdd22ad91f322a4e92d1c8dc480eea 191615115 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137433/BOO001.A0101_rmdup.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137433/BOO001.A0101_rmdup.bam.bai 21007fa281186af1582f9f544e9408bd;71d4bd87f92cc8bf3952fdf166d8ba19
BOO003 half ds n/a ERR13137434 PRJEB74730 SAMEA5043930 BOO003 ERS2855664 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA BOO003.A0101_rmdup WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/034/ERR13137434/ERR13137434.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/034/ERR13137434/ERR13137434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/034/ERR13137434/ERR13137434_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/034/ERR13137434/ERR13137434.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/034/ERR13137434/ERR13137434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/034/ERR13137434/ERR13137434_2.fastq.gz 3904024522;2871305;3118710 a024ad7850e2021e9f9a6f71066c31ca;2cf89e437b310b09a948d11a180cf72a;3d5fefe7d93015a0505735e7924bbf6d 123163923 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137434/BOO003.A0101_rmdup.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137434/BOO003.A0101_rmdup.bam.bai 0b75d6d6fcf6a0a6ec806e497134995c;c52b84e295b748c9ca9a8cb0bb679fd3
BOO004 half ds n/a ERR13137435 PRJEB74730 SAMEA5043931 BOO004 ERS2855665 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA BOO004.A0101_udghalf.trimmed WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/035/ERR13137435/ERR13137435.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/035/ERR13137435/ERR13137435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/035/ERR13137435/ERR13137435_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/035/ERR13137435/ERR13137435.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/035/ERR13137435/ERR13137435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/035/ERR13137435/ERR13137435_2.fastq.gz 34631704452;14244103427;16157684521 8fc217df4f11d12784b53ee319045c38;ed4f4efc0a528b6180f755e4c7dbd829;dea3cabe28b529c23178a0884420334e 2258980636 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137435/BOO004.A0101_udghalf.trimmed.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137435/BOO004.A0101_udghalf.trimmed.bam.bai 4c168af81c164044187ffa2d1a328052;c4f0d83847502ccbf0bcff1249041bcd
BOO005 half ds n/a ERR13137436 PRJEB74730 SAMEA5043932 BOO005 ERS2855666 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA BOO005.A0101_rmdup WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/036/ERR13137436/ERR13137436.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/036/ERR13137436/ERR13137436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/036/ERR13137436/ERR13137436_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/036/ERR13137436/ERR13137436.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/036/ERR13137436/ERR13137436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/036/ERR13137436/ERR13137436_2.fastq.gz 6411839867;1147803008;1273103688 6432be97dfd5a8438e2d8eaadb276e4d;563be569601df9369bd53d3e900d1122;4e0923d15f41df207eae5c051b6db92b 281596594 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137436/BOO005.A0101_rmdup.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137436/BOO005.A0101_rmdup.bam.bai f1bf3a786308601f0758d262b5a15893;618349f18ad1048455db7b5884c88d69
BOO006 half ds n/a ERR13137437 PRJEB74730 SAMEA5043933 BOO006 ERS2855667 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA BOO006.A0101_rmdup WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/037/ERR13137437/ERR13137437.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/037/ERR13137437/ERR13137437.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_2.fastq.gz 4232606835;3428212;3749997 5a428722eaec09d52c89dd72d62dca26;2beff907fbacaa0213de117c00a16852;8c15d7ce7b7986cedfd396f56da9da78 133321698 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137437/BOO006.A0101_rmdup.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137437/BOO006.A0101_rmdup.bam.bai 1567fde99fba5af7b46e1308aa6d1f3e;a6c743f748ba94527869eff88d602f35
BOO008 half ds n/a ERR13137429 PRJEB74730 SAMEA115646281 BOO008 ERS20098999 2024-05-24 2024-05-24 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA BOO008.A0101.TF1.1 Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/029/ERR13137429/ERR13137429.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/029/ERR13137429/ERR13137429.fastq.gz 165445828 31121e7e37b7f4cde5d2a7fbdf95e3fb 4962617 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137429/BOO008.A0101.TF1.1.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137429/BOO008.A0101.TF1.1.bam.bai cc2236d046f6b0c80cad6b5a4a6d508c;8fbe220dd94ce2c8ca9948cbff4de90b
BOO009 half ds n/a ERR13137430 PRJEB74730 SAMEA115646282 BOO009 ERS20099000 2024-05-24 2024-05-24 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA BOO009.A0101.TF1.1 Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/030/ERR13137430/ERR13137430.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/030/ERR13137430/ERR13137430.fastq.gz 403966654 149e19ded92091b8a16a4f2d16024ade 13047471 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137430/BOO009.A0101.TF1.1.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137430/BOO009.A0101.TF1.1.bam.bai 9e3dea4381be846c4e6a626f353093b2;e94b342b6aab1bddaea88dbbe4eb473b
ROT002 minus ss n/a ERR13137403 PRJEB74730 SAMEA115646272 ROT002 ERS20098990 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT002_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/003/ERR13137403/ERR13137403.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/003/ERR13137403/ERR13137403.fastq.gz 2254961472 c0e90823d9594a4f6d385c569ec2c3a0 71833161 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137403/ROT002_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137403/ROT002_merged.bam.bai f5ded14e95b13fb4ebadb6fbe2777648;86f8f1303fe559ed1027bf8fe62d615a
ROT003 minus ss n/a ERR13137404 PRJEB74730 SAMEA115646273 ROT003 ERS20098991 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT003_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/004/ERR13137404/ERR13137404.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/004/ERR13137404/ERR13137404.fastq.gz 2256582664 7fecaa0660e9aa0fe433b0852ad8d207 75096195 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137404/ROT003_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137404/ROT003_merged.bam.bai 6f5c087c88355c1b7863c5eb64a72b3a;5e8d16327a167326fa92ef304e9491f0
ROT004 minus ss n/a ERR13137405 PRJEB74730 SAMEA115646274 ROT004 ERS20098992 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT004_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/005/ERR13137405/ERR13137405.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/005/ERR13137405/ERR13137405.fastq.gz 2001542799 5bf758ee9ed26f9a2a305e4d70c8c6b9 65795832 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137405/ROT004_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137405/ROT004_merged.bam.bai ff071e9d2e015574bbe120b76d612125;df562e520cff2b64c919d238d4b16f07
ROT006 minus ss n/a ERR13137406 PRJEB74730 SAMEA115646275 ROT006 ERS20098993 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT006_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/006/ERR13137406/ERR13137406.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/006/ERR13137406/ERR13137406.fastq.gz 2172225699 363a456267fa127feaa611ab4c1d3474 72668582 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137406/ROT006_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137406/ROT006_merged.bam.bai aa5164f20cce6063544baa73b7076033;e6f43509861eaa4f011af7ec2f750bb3
ROT011 minus ss n/a ERR13137407 PRJEB74730 SAMEA115646276 ROT011 ERS20098994 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT011.merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/007/ERR13137407/ERR13137407.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/007/ERR13137407/ERR13137407.fastq.gz 1803630042 3ce1d92c0e2bbee5ef4bc1aac9e202fb 55926511 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137407/ROT011_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137407/ROT011_merged.bam.bai c57410404379d07003eb612ab7633c57;2cd60794a57dda3a13a0449746d4e501
ROT013 minus ss n/a ERR13137408 PRJEB74730 SAMEA115646277 ROT013 ERS20098995 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT013_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/008/ERR13137408/ERR13137408.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/008/ERR13137408/ERR13137408.fastq.gz 1945825904 b327d55971f3cc2265632fa8649df43a 59743824 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137408/ROT013_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137408/ROT013_merged.bam.bai 2d62ef1fcdae53ca8d65e902690160b2;c1dadb62fb8e6ae18674a701d7f49216
ROT015 minus ss n/a ERR13137409 PRJEB74730 SAMEA115646278 ROT015 ERS20098996 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT015_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/009/ERR13137409/ERR13137409.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/009/ERR13137409/ERR13137409.fastq.gz 1964537495 a1b00e8a84e9efd779b95defa5ebe8bb 64423723 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137409/ROT015_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137409/ROT015_merged.bam.bai fc9ca414e3fa0abff579a27d2c5dab5e;3d1e54af0ebf9bef016a10ed46b703ff
ROT016 minus ss n/a ERR13137410 PRJEB74730 SAMEA115646279 ROT016 ERS20098997 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT016_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/010/ERR13137410/ERR13137410.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/010/ERR13137410/ERR13137410.fastq.gz 2450997514 41684856d0841ddee2c580f14087e09a 72900732 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137410/ROT016_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137410/ROT016_merged.bam.bai 2b9257e3cd3baa1800f53c5154832ecd;76bd528282a99e2b20071b413e769d9b
ROT017 minus ss n/a ERR13137411 PRJEB74730 SAMEA115646280 ROT017 ERS20098998 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT017 Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/011/ERR13137411/ERR13137411.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/011/ERR13137411/ERR13137411.fastq.gz 119901137 a98228c16109f0e7ba6c22346532b0de 3527919 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137411/ROT017.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137411/ROT017.bam.bai 5ee7614cf7dd8606e5617452c5f0ad31;42a0b78383f9955ab38c5ec5de25d893
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