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0.2.1 #28

Merged
merged 38 commits into from
Nov 2, 2023
Merged

0.2.1 #28

merged 38 commits into from
Nov 2, 2023

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TCLamnidis
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@TCLamnidis TCLamnidis commented Nov 2, 2023

v0.2.1dev - 02/11/2023

Added

  • scripts/minotaur_packager.sh: Script to create poseidon half-packages and fill in janno from eager results
  • scripts/populate_janno.py: Script to fill in janno files with poseidon metadata from nf-core eager results.

Fixed

  • scripts/validate_downloaded_data.sh: Add helptext
  • scripts/run_eager.sh: Now uses big_data profile
  • Updates to templates for packages and configs. These are now defunct as they are pulled from the minotaur-recipes repo, and will be removed in netx release.
  • scripts/download_and_localise_package_files.sh distinction between symlink dir and package_eager_dir.

Dependencies

  • nf-core/eager=2.4.6

Deprecated

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review to see changes in main:
Added files for 2020_Naegele_Caribbean, 2021_Saag_EastEuropean, 2021_Yaka_Anatolia

@TCLamnidis TCLamnidis merged commit 948dc31 into main Nov 2, 2023
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