0.4.0dev

v0.4.0dev - 08/10/2024

Added

• Updated Minotaur.config to include an adapter list. This ensures PE ssDNA data is processed correctly.
• Use mapdamage2 for damage calculation in eager. Now limiting damage calculation to 1M reads, instead of all.
• minotaur_packager.sh:
  • Minotaur packages are now sorted by ascending Poseidon_ID, to ensure stability across any reruns.
  • All Minotaur packages contain Thiseas C. Lamnidis as a contributor (i.e. to whom users should direct questions regarding processing etc).
  • Now includes -i/--interactive option to help debug janno fill-in errors.
• run_eager.sh: Now using nf-core/eager 2.5.1.

Fixed

• populate_janno.py: Small bugfix to remove duplicate sample names when multiple libraries of a sample exist.
• source_me.sh:
  • Removed some obsolete functions
  • symlink_names_from_ena_fastq() Can now deal with merged PE data, which produce 3 FastQs. Only merged reads will be kept for processing.

Dependencies

• nf-core/eager=2.5.1
• poseidon-trident=1.5.4.0
• pyeager=0.1.4.3
• argparse=1.4.0

Deprecated

• Removed some more scripts that have moved to the minotaur-recipes repo.