Ubuntu #268
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
schedule: | |
- cron: 0 0 * * 1 # schedule to run at midnight on Monday each week | |
push: | |
branches: | |
- main | |
- master | |
pull_request: | |
branches: | |
- main | |
- master | |
name: Ubuntu | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-20.04, r: 'release'} | |
- {os: ubuntu-20.04, r: 'devel'} | |
- {os: ubuntu-20.04, r: 'devel', pkgs: 'depends only'} | |
env: | |
_R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true | |
_R_CHECK_FORCE_SUGGESTS_: false | |
_R_CHECK_TIMINGS_: 10 | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
GGMAP_KEY: ${{ secrets.GGMAP_STADIAMAPS_API_KEY }} | |
CI: true | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
use-public-rspm: true | |
- name: Install system dependencies | |
run: | | |
sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable | |
sudo apt update | |
sudo apt-get install \ | |
libgdal-dev libgeos-dev libproj-dev gdal-bin grass \ | |
libgmp3-dev libmpfr-dev libudunits2-dev \ | |
libharfbuzz-dev libfribidi-dev | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
cache-version: 4 | |
extra-packages: | | |
any::covr | |
any::rcmdcheck | |
any::remotes | |
cran/XML | |
cran/dotCall64 | |
prepr=?ignore | |
link2GI=?ignore | |
rgrass=?ignore | |
smoothr=?ignore | |
OpenMPController=?ignore | |
needs: | | |
check | |
coverage | |
- name: Install spatial R packages | |
run: | | |
options(repos = "https://cloud.r-project.org/") | |
install.packages("sf") | |
install.packages("terra") | |
install.packages("lwgeom") | |
install.packages("link2GI") | |
install.packages("rgrass") | |
install.packages("smoothr") | |
remotes::install_github("prioritizr/prepr") | |
shell: Rscript {0} | |
- name: Session information | |
run: | | |
options(width = 100) | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
shell: Rscript {0} | |
- name: Set R environmental variables | |
run: | | |
echo GGMAP_STADIAMAPS_API_KEY="$GGMAP_KEY" >> ~/.Renviron | |
shell: bash | |
- name: Environmental variables | |
if: matrix.config.pkgs == 'depends only' | |
run: | | |
echo "_R_CHECK_DEPENDS_ONLY_=true" >> $GITHUB_ENV | |
- uses: r-lib/actions/check-r-package@v2 | |
with: | |
args: 'c("--no-manual", "--as-cran", "--no-build-vignettes")' | |
upload-snapshots: true | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Test coverage | |
if: runner.os == 'Linux' && matrix.config.r == 'release' | |
run: | | |
cov <- covr::package_coverage( | |
quiet = FALSE, | |
clean = FALSE, | |
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | |
) | |
covr::to_cobertura(cov) | |
shell: Rscript {0} | |
- uses: codecov/codecov-action@v4 | |
if: runner.os == 'Linux' && matrix.config.r == 'release' | |
with: | |
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | |
file: ./cobertura.xml | |
plugin: noop | |
disable_search: true | |
token: ${{ secrets.CODECOV_TOKEN }} | |