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@@ -171,7 +171,7 @@
 <div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/* INCLUDE_INITIALCONDITIONS_H_ */</span><span class="preprocessor"></span></div>
 <div class="ttc" id="aclassInitialConditionVector_html"><div class="ttname"><a href="classInitialConditionVector.html">InitialConditionVector</a></div><div class="ttdef"><b>Definition:</b> initialConditions.h:50</div></div>
 <div class="ttc" id="aclassInitialCondition_html"><div class="ttname"><a href="classInitialCondition.html">InitialCondition</a></div><div class="ttdef"><b>Definition:</b> initialConditions.h:16</div></div>
-<div class="ttc" id="aclassMatrixFreePDE_html"><div class="ttname"><a href="classMatrixFreePDE.html">MatrixFreePDE</a></div><div class="ttdoc">This is the abstract base class for the matrix free implementation of parabolic and elliptic BVP's,...</div><div class="ttdef"><b>Definition:</b> matrixFreePDE.h:68</div></div>
+<div class="ttc" id="aclassMatrixFreePDE_html"><div class="ttname"><a href="classMatrixFreePDE.html">MatrixFreePDE</a></div><div class="ttdoc">This is the abstract base class for the matrix free implementation of parabolic and elliptic BVP's,...</div><div class="ttdef"><b>Definition:</b> matrixFreePDE.h:66</div></div>
 <div class="ttc" id="aclassuserInputParameters_html"><div class="ttname"><a href="classuserInputParameters.html">userInputParameters</a></div><div class="ttdef"><b>Definition:</b> userInputParameters.h:39</div></div>
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doxygen/inputFileReader_8h_source.html

@@ -149,14 +149,14 @@
 <div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160; </div>
 <div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/* INCLUDE_INPUTFILEREADER_H_ */</span><span class="preprocessor"></span></div>
 <div class="ttc" id="aclassinputFileReader_html"><div class="ttname"><a href="classinputFileReader.html">inputFileReader</a></div><div class="ttdoc">Input file reader.</div><div class="ttdef"><b>Definition:</b> inputFileReader.h:16</div></div>
-<div class="ttc" id="aclassinputFileReader_html_a1c1efc54c7f0966ce1c0a26c2d4e94a2"><div class="ttname"><a href="classinputFileReader.html#a1c1efc54c7f0966ce1c0a26c2d4e94a2">inputFileReader::get_entry_name_ending_list</a></div><div class="ttdeci">static std::vector&lt; std::string &gt; get_entry_name_ending_list(const std::string &amp;parameters_file_name, const std::string &amp;keyword, const std::string &amp;entry_name_begining)</div><div class="ttdoc">Get the trailing part of the entry name after a specified string (used to extract the model constant ...</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:244</div></div>
-<div class="ttc" id="aclassinputFileReader_html_a29cbecae135a8d87cfca073ec65981bb"><div class="ttname"><a href="classinputFileReader.html#a29cbecae135a8d87cfca073ec65981bb">inputFileReader::declare_parameters</a></div><div class="ttdeci">void declare_parameters(dealii::ParameterHandler &amp;parameter_handler, const unsigned int num_of_constants) const</div><div class="ttdoc">Method to declare the parameters to be read from an input file.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:296</div></div>
-<div class="ttc" id="aclassinputFileReader_html_a5266e9ff9a9867c6464e0fddde88227a"><div class="ttname"><a href="classinputFileReader.html#a5266e9ff9a9867c6464e0fddde88227a">inputFileReader::get_subsection_entry_list</a></div><div class="ttdeci">static std::vector&lt; std::string &gt; get_subsection_entry_list(const std::string &amp;parameters_file_name, const std::string &amp;subsec_name, const std::string &amp;entry_name, const std::string &amp;default_entry)</div><div class="ttdoc">Method to get a list of entry values from multiple subsections in an input file.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:140</div></div>
-<div class="ttc" id="aclassinputFileReader_html_a578f1601441f9c8bb6f3dcda8a918cfb"><div class="ttname"><a href="classinputFileReader.html#a578f1601441f9c8bb6f3dcda8a918cfb">inputFileReader::parse_line</a></div><div class="ttdeci">static bool parse_line(std::string line, const std::string &amp;keyword, const std::string &amp;entry_name, std::string &amp;out_string, bool expect_equals_sign)</div><div class="ttdoc">Method to check if a line has the desired contents and if so, extract it.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:72</div></div>
-<div class="ttc" id="aclassinputFileReader_html_a71e63d00d628829f4ce547969c7f547c"><div class="ttname"><a href="classinputFileReader.html#a71e63d00d628829f4ce547969c7f547c">inputFileReader::strip_spaces</a></div><div class="ttdeci">static void strip_spaces(std::string &amp;line)</div><div class="ttdoc">Strip spaces from the front and back of a string.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:37</div></div>
+<div class="ttc" id="aclassinputFileReader_html_a1c1efc54c7f0966ce1c0a26c2d4e94a2"><div class="ttname"><a href="classinputFileReader.html#a1c1efc54c7f0966ce1c0a26c2d4e94a2">inputFileReader::get_entry_name_ending_list</a></div><div class="ttdeci">static std::vector&lt; std::string &gt; get_entry_name_ending_list(const std::string &amp;parameters_file_name, const std::string &amp;keyword, const std::string &amp;entry_name_begining)</div><div class="ttdoc">Get the trailing part of the entry name after a specified string (used to extract the model constant ...</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:240</div></div>
+<div class="ttc" id="aclassinputFileReader_html_a29cbecae135a8d87cfca073ec65981bb"><div class="ttname"><a href="classinputFileReader.html#a29cbecae135a8d87cfca073ec65981bb">inputFileReader::declare_parameters</a></div><div class="ttdeci">void declare_parameters(dealii::ParameterHandler &amp;parameter_handler, const unsigned int num_of_constants) const</div><div class="ttdoc">Method to declare the parameters to be read from an input file.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:292</div></div>
+<div class="ttc" id="aclassinputFileReader_html_a5266e9ff9a9867c6464e0fddde88227a"><div class="ttname"><a href="classinputFileReader.html#a5266e9ff9a9867c6464e0fddde88227a">inputFileReader::get_subsection_entry_list</a></div><div class="ttdeci">static std::vector&lt; std::string &gt; get_subsection_entry_list(const std::string &amp;parameters_file_name, const std::string &amp;subsec_name, const std::string &amp;entry_name, const std::string &amp;default_entry)</div><div class="ttdoc">Method to get a list of entry values from multiple subsections in an input file.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:136</div></div>
+<div class="ttc" id="aclassinputFileReader_html_a578f1601441f9c8bb6f3dcda8a918cfb"><div class="ttname"><a href="classinputFileReader.html#a578f1601441f9c8bb6f3dcda8a918cfb">inputFileReader::parse_line</a></div><div class="ttdeci">static bool parse_line(std::string line, const std::string &amp;keyword, const std::string &amp;entry_name, std::string &amp;out_string, bool expect_equals_sign)</div><div class="ttdoc">Method to check if a line has the desired contents and if so, extract it.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:68</div></div>
+<div class="ttc" id="aclassinputFileReader_html_a71e63d00d628829f4ce547969c7f547c"><div class="ttname"><a href="classinputFileReader.html#a71e63d00d628829f4ce547969c7f547c">inputFileReader::strip_spaces</a></div><div class="ttdeci">static void strip_spaces(std::string &amp;line)</div><div class="ttdoc">Strip spaces from the front and back of a string.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:33</div></div>
 <div class="ttc" id="aclassinputFileReader_html_a93ea5b9b49d0fa9962f88e199bd063ff"><div class="ttname"><a href="classinputFileReader.html#a93ea5b9b49d0fa9962f88e199bd063ff">inputFileReader::inputFileReader</a></div><div class="ttdeci">inputFileReader(const std::string &amp;input_file_name, const AttributesList &amp;_var_attributes, const AttributesList &amp;_pp_attributes)</div><div class="ttdoc">Constructor.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:8</div></div>
-<div class="ttc" id="aclassinputFileReader_html_ab9dceabd16ea0224bf1bbf3719e4ee25"><div class="ttname"><a href="classinputFileReader.html#ab9dceabd16ea0224bf1bbf3719e4ee25">inputFileReader::get_number_of_entries</a></div><div class="ttdeci">static unsigned int get_number_of_entries(const std::string &amp;parameters_file_name, const std::string &amp;keyword, const std::string &amp;entry_name)</div><div class="ttdoc">Method to count the number of related entries in an input file.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:216</div></div>
-<div class="ttc" id="aclassinputFileReader_html_af80fe9572970eb100c4f0046bf2c429f"><div class="ttname"><a href="classinputFileReader.html#af80fe9572970eb100c4f0046bf2c429f">inputFileReader::check_keyword_match</a></div><div class="ttdeci">static bool check_keyword_match(std::string &amp;line, const std::string &amp;keyword)</div><div class="ttdoc">Check whether a string starts with a keyword.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:51</div></div>
+<div class="ttc" id="aclassinputFileReader_html_ab9dceabd16ea0224bf1bbf3719e4ee25"><div class="ttname"><a href="classinputFileReader.html#ab9dceabd16ea0224bf1bbf3719e4ee25">inputFileReader::get_number_of_entries</a></div><div class="ttdeci">static unsigned int get_number_of_entries(const std::string &amp;parameters_file_name, const std::string &amp;keyword, const std::string &amp;entry_name)</div><div class="ttdoc">Method to count the number of related entries in an input file.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:212</div></div>
+<div class="ttc" id="aclassinputFileReader_html_af80fe9572970eb100c4f0046bf2c429f"><div class="ttname"><a href="classinputFileReader.html#af80fe9572970eb100c4f0046bf2c429f">inputFileReader::check_keyword_match</a></div><div class="ttdeci">static bool check_keyword_match(std::string &amp;line, const std::string &amp;keyword)</div><div class="ttdoc">Check whether a string starts with a keyword.</div><div class="ttdef"><b>Definition:</b> inputFileReader.cc:47</div></div>
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