alt_pam = None for cpf1 enzyme (#81) #238
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| jobs: | |
| run_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python: ['3.10'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Upgrade setuptools | |
| run: | | |
| pip3 install wheel --upgrade | |
| pip3 install setuptools --upgrade | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install package with extras | |
| run: | | |
| python -m pip install .[dev,web] | |
| - name: Pre-commit checks | |
| run: | | |
| pre-commit run --all-files | |
| - name: Run pytest | |
| # Not all tests currently work on the CI. Once they do, we can simply run 'pytest' | |
| run: | | |
| pytest tests/test_config.py | |
| pytest tests/test_genome.py | |
| pytest tests/test_add_organism.py |