Update prost and fix many things #1912

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Run time

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Job	Run time
test (stable)	2m 52s
bench	3m 19s
build (stable)	2m 18s
check32b (stable)	43s
build (beta)	2m 26s
test (beta)	2m 50s
check32b (beta)	47s
clippy	57s
build (nightly-2024-04-01)	2m 41s
test (nightly-2024-04-01)	3m 8s
check32b (nightly-2024-04-01)	45s
coverage	10m 18s
deny	2m 55s
doc	52s
formatting	57s
Rust 1.71.1	2m 58s
regen	1m 14s
udeps	6m 23s
Rust 1.72.0	2m 53s
	51m 16s