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1. StructuralNeurobiologyLab/SyConn StructuralNeurobiologyLab/SyConn Public

   Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

   Python 40 9

2. ELEKTRONN/elektronn3 ELEKTRONN/elektronn3 Public

   A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

   Python 160 27

3. knossos-project/knossos_utils knossos-project/knossos_utils Public

   Python library for interacting with KNOSSOS data sets and annotation files

   Python 9 9

4. StructuralNeurobiologyLab/MorphX StructuralNeurobiologyLab/MorphX Public

   Toolkit for exploration and segmentation of 3D morphologies.

   Python 3 1

5. SBEMimage/SBEMimage SBEMimage/SBEMimage Public

   Versatile acquisition software for serial block-face electron microscopy

   Python 22 18