fixing URL bugs in docs

ptaconet · Nov 12, 2024 · a6ef8b0 · a6ef8b0
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diff --git a/.data_collections.csv b/.data_collections.csv
@@ -68,7 +68,7 @@ VNP43MA3.001,VIIRS,VIIRS/NPP Albedo Daily L3 Global 1 km SIN Grid,Albedo,NASA US
 VNP43MA4.001,VIIRS,VIIRS/NPP Nadir BRDF-Adjusted Reflectance Daily L3 Global 1 km SIN ,Surface reflectance,NASA USGS LP DAAC,https://lpdaac.usgs.gov/products/vnp43ma4v001,https://doi.org/10.5067/VIIRS/VNP43MA4.001,1,1000,1,day,Global,2012-01-17,ongoing,9,https://search.earthdata.nasa.gov/search?q=VNP43MA4.001&ok=VNP43MA4.001,Implemented,earthdata,https://opendap.cr.usgs.gov/opendap/hyrax/,https://opendap.cr.usgs.gov/opendap/hyrax/VNP43MA4.001/contents.html,https://opendap.cr.usgs.gov/opendap/hyrax/VNP43MA4.001/h00v08.ncml,XDim,YDim,time,eos_cf_projection,+proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs
 GPM_3IMERGDE.06,GPM,GPM IMERG Early Precipitation L3 1 day 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGDE_06/summary,https://doi.org/10.5067/GPM/IMERGDE/DAY/06,6.1,10000,1,day,Global,2000-06-01,ongoing,1,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGDE_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGDE.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGDE.06/2000/06/3B-DAY-E.MS.MRG.3IMERG.20000601-S000000-E235959.V06.nc4,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs
 GPM_3IMERGHHE.06,GPM,GPM IMERG Early Precipitation L3 Half Hourly 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGDHHE_06/summary,https://doi.org/10.5067/GPM/IMERG/3B-HH-E/06,6.1,10000,30,minute,Global,2000-06-01,ongoing,0,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGHHE_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHHE.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHHE.06/2000/153/3B-HHR-E.MS.MRG.3IMERG.20000601-S000000-E002959.0000.V06B.HDF5,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs
-GPM_3IMERGHHL.06,GPM,GPM IMERG Late Precipitation L3 Half Hourly 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGHHL_06/summary,https://doi.org/10.5067/GPM/IMERG/3B-HH-L/06 ,6.1,10000,30,minute,Global,2000-06-01,ongoing,1,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGHHL_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHHL.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHHL.06/2000/153/3B-HHR-L.MS.MRG.3IMERG.20000601-S000000-E002959.0000.V06B.HDF5,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs
+GPM_3IMERGHHL.06,GPM,GPM IMERG Late Precipitation L3 Half Hourly 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGHHL_06/summary,https://doi.org/10.5067/GPM/IMERG/3B-HH-L/06,6.1,10000,30,minute,Global,2000-06-01,ongoing,1,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGHHL_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHHL.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHHL.06/2000/153/3B-HHR-L.MS.MRG.3IMERG.20000601-S000000-E002959.0000.V06B.HDF5,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs
 GPM_3IMERGDF.06,GPM,GPM IMERG Final Precipitation L3 1 day 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGDF_06/summary,https://doi.org/10.5067/GPM/IMERGDF/DAY/06,6.1,10000,1,day,Global,2000-06-01,ongoing,100,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGDF_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGDF.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/hyrax/GPM_L3/GPM_3IMERGDF.06/2000/06/3B-DAY.MS.MRG.3IMERG.20000601-S000000-E235959.V06.nc4,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs
 GPM_3IMERGHH.06,GPM,GPM IMERG Final Precipitation L3 Half Hourly 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGHH_06/summary,https://doi.org/10.5067/GPM/IMERG/3B-HH/06,6.1,10000,30,minute,Global,2000-06-01,ongoing,100,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGHH_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGHH.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/hyrax/GPM_L3/GPM_3IMERGHH.06/2000/153/3B-HHR.MS.MRG.3IMERG.20000601-S000000-E002959.0000.V06B.HDF5,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs
 GPM_3IMERGM.06,GPM,GPM IMERG Final Precipitation L3 1 month 0.1 degree x 0.1 degree V06,Rainfall,NASA GES DISC,https://disc.gsfc.nasa.gov/datasets/GPM_3IMERGM_06/summary,https://doi.org/10.5067/GPM/IMERG/3B-MONTH/06,6.1,10000,1,month,Global,2000-06-01,ongoing,100,https://search.earthdata.nasa.gov/search?q=GPM_3IMERGM_06,Implemented,earthdata,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/GPM_L3/GPM_3IMERGM.06/,https://gpm1.gesdisc.eosdis.nasa.gov/opendap/hyrax/GPM_L3/GPM_3IMERGM.06/2000/3B-MO.MS.MRG.3IMERG.20000601-S000000-E235959.06.V06B.HDF5,lon,lat,time,NA,+proj=longlat +datum=WGS84 +no_defs +type=crs

diff --git a/R/mf_modisfast.R b/R/mf_modisfast.R
@@ -15,7 +15,7 @@
 #' @inheritParams mf_import_data
 #' @param earthdata_username EarthData username
 #' @param earthdata_password EarthData username
-#' @param import boolean. Import the data as a SpatRast object ? defaut TRUE. FALSE will download the data but not import them it in R.
+#' @param import boolean. Import the data as a SpatRast object ? default TRUE. FALSE will download the data but not import them it in R.
 #' @param ... Further arguments to be passed to \link{mf_import_data}
 #'
 #' @return if the parameter \code{import} is set to TRUE, a \code{terra::SpatRast}

diff --git a/R/sysdata.rda b/R/sysdata.rda
diff --git a/README.Rmd b/README.Rmd
@@ -60,7 +60,7 @@ This package enables to build OPeNDAP (https) URLs given input parameters such a
 
 ## Overview
 
-**`modisfast`** is an R package designed for **easy** and **fast** downloads of [**MODIS**](https://lpdaac.usgs.gov/data/get-started-data/collection-overview/missions/modis-overview/) Land products, [**VIIRS**](https://lpdaac.usgs.gov/data/get-started-data/collection-overview/missions/s-npp-nasa-viirs-overview/) Land products, and [**GPM**](https://gpm.nasa.gov/data/) (Global Precipitation Measurement Mission) Earth Observation data.
+**`modisfast`** is an R package designed for **easy** and **fast** downloads of [**MODIS**](https://lpdaac.usgs.gov/data/get-started-data/collection-overview/missions/modis-overview/) Land products, [**VIIRS**](https://lpdaac.usgs.gov/data/get-started-data/collection-overview/missions/s-npp-nasa-viirs-overview/) Land products, and [**GPM**](https://gpm.nasa.gov/data) (Global Precipitation Measurement Mission) Earth Observation data.
 
 `modisfast` uses the abilities offered by the [OPeNDAP](https://www.opendap.org/about/) framework (*Open-source Project for a Network Data Access Protocol*) to download a subset of Earth Observation data cube, along spatial, temporal or any other data dimension (depth, ...). This way, it reduces downloading time and disk usage to their minimum : no more 1° x 1° MODIS tiles with 10 bands when your region of interest is only 30 km x 30 km wide and you need 2 bands ! Moreover, `modisfast` enables parallel downloads of data.
 
@@ -261,7 +261,7 @@ There are other R packages available for accessing MODIS data. Below is a compar
 | :---------------------: | :------------------------------------------: | :-------------: |  :-------------: | :-------------: | :-------------: | :-------------------: | :-------------------: |
 | [`modisfast`](https://github.com/ptaconet/modisfast)      | MODIS, VIIRS, GPM |  :white_check_mark: |  :white_check_mark:  |   :white_check_mark:  |   :white_check_mark:  | unlimited | :white_check_mark:
 | [`appeears`](https://github.com/bluegreen-labs/appeears)  |  MODIS, VIIRS, and many others  |  :white_check_mark: |   :white_check_mark:   |   :white_check_mark: |  :white_check_mark: | unlimited | variable
-| [`MODISTools`](https://github.com/ropensci/MODISTools)  |  MODIS, VIIRS  |  :white_check_mark: |   :x:   |   :white_check_mark: |   :white_check_mark:   | 200 km x 200 km | :white_check_mark: 
+| [`MODISTools`](https://github.com/bluegreen-labs/MODISTools/)  |  MODIS, VIIRS  |  :white_check_mark: |   :x:   |   :white_check_mark: |   :white_check_mark:   | 200 km x 200 km | :white_check_mark: 
 | [`rgee`](https://github.com/r-spatial/rgee)  |  MODIS, VIIRS, GPM, and many others  |  :white_check_mark: |   :x:   |   :white_check_mark: |  :white_check_mark: | unlimited | not tested
 | [`MODIStsp`](https://github.com/ropensci/MODIStsp)   |  MODIS |  :x: |     |  :x: |   :white_check_mark:   | unlimited | NA
 | [`MODIS`](https://github.com/fdetsch/MODIS)       | MODIS  |  :x: |  :x:  |  :x:  |   :x:   | NA | NA

diff --git a/README.md b/README.md
@@ -56,7 +56,7 @@ downloads of
 [**MODIS**](https://lpdaac.usgs.gov/data/get-started-data/collection-overview/missions/modis-overview/)
 Land products,
 [**VIIRS**](https://lpdaac.usgs.gov/data/get-started-data/collection-overview/missions/s-npp-nasa-viirs-overview/)
-Land products, and [**GPM**](https://gpm.nasa.gov/data/) (Global
+Land products, and [**GPM**](https://gpm.nasa.gov/data) (Global
 Precipitation Measurement Mission) Earth Observation data.
 
 `modisfast` uses the abilities offered by the
@@ -2019,7 +2019,7 @@ GPM IMERG Early Precipitation L3 Half Hourly 0.1 degree x 0.1 degree V06
 </tr>
 <tr>
 <td style="text-align:left;">
-<a href="https://doi.org/10.5067/GPM/IMERG/3B-HH-L/06%20" style="     ">GPM_3IMERGHHL.06</a>
+<a href="https://doi.org/10.5067/GPM/IMERG/3B-HH-L/06" style="     ">GPM_3IMERGHHL.06</a>
 </td>
 <td style="text-align:left;">
 GPM
@@ -2157,14 +2157,14 @@ There are other R packages available for accessing MODIS data. Below is
 a comparison of modisfast with other packages available for downloading
 chunks of MODIS or VIIRS data :
 
-|                         Package                          |                Data                | Available on CRAN  | Utilizes open standards for data access protocols | Spatial subsetting\* | Dimensional subsetting\* | Maximum area size allowed for download |     Speed\*\*      |
-|:--------------------------------------------------------:|:----------------------------------:|:------------------:|:-------------------------------------------------:|:--------------------:|:------------------------:|:--------------------------------------:|:------------------:|
-|   [`modisfast`](https://github.com/ptaconet/modisfast)   |         MODIS, VIIRS, GPM          | :white_check_mark: |                :white_check_mark:                 |  :white_check_mark:  |    :white_check_mark:    |               unlimited                | :white_check_mark: |
-| [`appeears`](https://github.com/bluegreen-labs/appeears) |   MODIS, VIIRS, and many others    | :white_check_mark: |                :white_check_mark:                 |  :white_check_mark:  |    :white_check_mark:    |               unlimited                |      variable      |
-|  [`MODISTools`](https://github.com/ropensci/MODISTools)  |            MODIS, VIIRS            | :white_check_mark: |                        :x:                        |  :white_check_mark:  |    :white_check_mark:    |            200 km x 200 km             | :white_check_mark: |
-|       [`rgee`](https://github.com/r-spatial/rgee)        | MODIS, VIIRS, GPM, and many others | :white_check_mark: |                        :x:                        |  :white_check_mark:  |    :white_check_mark:    |               unlimited                |     not tested     |
-|    [`MODIStsp`](https://github.com/ropensci/MODIStsp)    |               MODIS                |        :x:         |                                                   |         :x:          |    :white_check_mark:    |               unlimited                |         NA         |
-|       [`MODIS`](https://github.com/fdetsch/MODIS)        |               MODIS                |        :x:         |                        :x:                        |         :x:          |           :x:            |                   NA                   |         NA         |
+|                            Package                            |                Data                | Available on CRAN  | Utilizes open standards for data access protocols | Spatial subsetting\* | Dimensional subsetting\* | Maximum area size allowed for download |     Speed\*\*      |
+|:-------------------------------------------------------------:|:----------------------------------:|:------------------:|:-------------------------------------------------:|:--------------------:|:------------------------:|:--------------------------------------:|:------------------:|
+|     [`modisfast`](https://github.com/ptaconet/modisfast)      |         MODIS, VIIRS, GPM          | :white_check_mark: |                :white_check_mark:                 |  :white_check_mark:  |    :white_check_mark:    |               unlimited                | :white_check_mark: |
+|   [`appeears`](https://github.com/bluegreen-labs/appeears)    |   MODIS, VIIRS, and many others    | :white_check_mark: |                :white_check_mark:                 |  :white_check_mark:  |    :white_check_mark:    |               unlimited                |      variable      |
+| [`MODISTools`](https://github.com/bluegreen-labs/MODISTools/) |            MODIS, VIIRS            | :white_check_mark: |                        :x:                        |  :white_check_mark:  |    :white_check_mark:    |            200 km x 200 km             | :white_check_mark: |
+|          [`rgee`](https://github.com/r-spatial/rgee)          | MODIS, VIIRS, GPM, and many others | :white_check_mark: |                        :x:                        |  :white_check_mark:  |    :white_check_mark:    |               unlimited                |     not tested     |
+|      [`MODIStsp`](https://github.com/ropensci/MODIStsp)       |               MODIS                |        :x:         |                                                   |         :x:          |    :white_check_mark:    |               unlimited                |         NA         |
+|          [`MODIS`](https://github.com/fdetsch/MODIS)          |               MODIS                |        :x:         |                        :x:                        |         :x:          |           :x:            |                   NA                   |         NA         |
 
 \* at the downloading phase
 

diff --git a/docs/reference/mf_modisfast.html b/docs/reference/mf_modisfast.html
diff --git a/man/mf_modisfast.Rd b/man/mf_modisfast.Rd