Standardize all labels

ptgolden · Nov 3, 2021 · afbcc26 · afbcc26
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diff --git a/ontology/aeo.md b/ontology/aeo.md
@@ -6,7 +6,7 @@ contact:
   label: Jonathan Bard
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 description: AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology
 domain: anatomy
 homepage: https://github.com/obophenotype/human-developmental-anatomy-ontology/

diff --git a/ontology/aero.md b/ontology/aero.md
@@ -7,7 +7,7 @@ contact:
 description: The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 domain: health
 homepage: http://purl.obolibrary.org/obo/aero
 is_obsolete: true

diff --git a/ontology/agro.md b/ontology/agro.md
@@ -4,7 +4,7 @@ id: agro
 title: Agronomy Ontology
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 domain: agronomy
 build:
   checkout: git clone  https://github.com/AgriculturalSemantics/agro.git

diff --git a/ontology/aism.md b/ontology/aism.md
@@ -26,7 +26,7 @@ dependencies:
 tracker: https://github.com/insect-morphology/aism/issues
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 activity_status: active
 repository: https://github.com/insect-morphology/aism
 preferredPrefix: AISM

diff --git a/ontology/amphx.md b/ontology/amphx.md
@@ -20,7 +20,7 @@ dependencies:
 tracker: https://github.com/EBISPOT/amphx_ontology/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY 3.0
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/EBISPOT/amphx_ontology
 preferredPrefix: AMPHX

diff --git a/ontology/apollo_sv.md b/ontology/apollo_sv.md
@@ -14,7 +14,7 @@ tracker: https://github.com/ApolloDev/apollo-sv/issues
 activity_status: active
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 repository: https://github.com/ApolloDev/apollo-sv
 preferredPrefix: APOLLO_SV
 ---

diff --git a/ontology/aro.md b/ontology/aro.md
@@ -9,7 +9,7 @@ description: Antibiotic resistance genes and mutations
 homepage: https://github.com/arpcard/aro
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 title: Antibiotic Resistance Ontology
 tracker: https://github.com/arpcard/aro/issues
 mailing_list: https://mailman.mcmaster.ca/mailman/listinfo/card-l

diff --git a/ontology/bcgo.md b/ontology/bcgo.md
@@ -14,7 +14,7 @@ products:
 tracker: https://github.com/obi-bcgo/bcgo/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 is_obsolete: true
 activity_status: inactive
 repository: https://github.com/obi-bcgo/bcgo

diff --git a/ontology/bco.md b/ontology/bco.md
@@ -8,7 +8,7 @@ contact:
   github: ramonawalls
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC-0
+  label: CC0 1.0
 description: An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.
 domain: biodiversity collections
 homepage: https://github.com/tucotuco/bco

diff --git a/ontology/bfo.md b/ontology/bfo.md
@@ -16,7 +16,7 @@ products:
   - id: bfo.obo
 license:
   url: http://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 title: Basic Formal Ontology
 review:
   date: 2016

diff --git a/ontology/bspo.md b/ontology/bspo.md
@@ -14,7 +14,7 @@ products:
 title: Biological Spatial Ontology
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY 3.0
+  label: CC BY 3.0
 build:
   checkout: git clone https://github.com/obophenotype/biological-spatial-ontology.git
   system: git

diff --git a/ontology/caro.md b/ontology/caro.md
@@ -7,7 +7,7 @@ contact:
   github: mellybelly
 license:
   url: https://creativecommons.org/licenses/by/3.0/
-  label: CC-BY 3.0
+  label: CC BY 3.0
 description: An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species
 domain: anatomy
 homepage: https://github.com/obophenotype/caro/

diff --git a/ontology/cdao.md b/ontology/cdao.md
@@ -15,7 +15,7 @@ build:
   method: owl2obo
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0 1.0 Universal
+  label: CC0 1.0
 activity_status: active
 repository: https://github.com/evoinfo/cdao
 preferredPrefix: CDAO

diff --git a/ontology/cdno.md b/ontology/cdno.md
@@ -27,7 +27,7 @@ dependencies:
 tracker: https://github.com/Southern-Cross-Plant-Science/cdno/issues
 license:
   url: https://creativecommons.org/licenses/by/3.0/
-  label: CC-BY 3.0
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/Southern-Cross-Plant-Science/cdno
 preferredPrefix: CDNO

diff --git a/ontology/ceph.md b/ontology/ceph.md
@@ -28,7 +28,7 @@ jobs:
     type: travis-ci
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 activity_status: inactive
 repository: https://github.com/obophenotype/cephalopod-ontology
 ---

diff --git a/ontology/chebi.md b/ontology/chebi.md
@@ -18,7 +18,7 @@ contact:
   github: "amalik01"
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 domain: biochemistry
 homepage: http://www.ebi.ac.uk/chebi
 page: http://www.ebi.ac.uk/chebi/init.do?toolBarForward=userManual

diff --git a/ontology/chiro.md b/ontology/chiro.md
@@ -33,7 +33,7 @@ dependencies:
 tracker: https://github.com/obophenotype/chiro/issues
 license:
   url: http://creativecommons.org/publicdomain/zero/1.0/
-  label: CC-0
+  label: CC0 1.0
 activity_status: active
 repository: https://github.com/obophenotype/chiro
 preferredPrefix: CHIRO

diff --git a/ontology/chmo.md b/ontology/chmo.md
@@ -3,7 +3,7 @@ layout: ontology_detail
 id: chmo
 license:
   url: http://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 contact:
   email: [email protected]
   label: Colin Batchelor

diff --git a/ontology/cido.md b/ontology/cido.md
@@ -13,7 +13,7 @@ products:
   - id: cido.owl
 license:
   url: http://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 activity_status: active
 repository: https://github.com/cido-ontology/cido
 preferredPrefix: CIDO

diff --git a/ontology/cio.md b/ontology/cio.md
@@ -7,7 +7,7 @@ contact:
   github: fbastian
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0
+  label: CC0 1.0
 title: Confidence Information Ontology
 description: An ontology to capture confidence information about annotations.
 homepage: https://github.com/BgeeDB/confidence-information-ontology

diff --git a/ontology/cl.md b/ontology/cl.md
@@ -21,7 +21,7 @@ contact:
   github: addiehl
 license:
   url: http://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 taxon:
   id: NCBITaxon:33208
   label: Metazoa

diff --git a/ontology/clao.md b/ontology/clao.md
@@ -21,7 +21,7 @@ dependencies:
 tracker: https://github.com/luis-gonzalez-m/Collembola/issues
 license:
   url: http://creativecommons.org/publicdomain/zero/1.0/
-  label: CC-0
+  label: CC0 1.0
 activity_status: active
 repository: https://github.com/luis-gonzalez-m/Collembola
 preferredPrefix: CLAO

diff --git a/ontology/clo.md b/ontology/clo.md
@@ -17,7 +17,7 @@ dependencies:
   - id: ncbitaxon
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY 3.0
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/CLO-Ontology/CLO
 preferredPrefix: CLO

diff --git a/ontology/clyh.md b/ontology/clyh.md
@@ -23,7 +23,7 @@ dependencies:
 tracker: https://github.com/EBISPOT/clyh_ontology/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY 3.0
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/EBISPOT/clyh_ontology
 preferredPrefix: CLYH

diff --git a/ontology/cmo.md b/ontology/cmo.md
@@ -6,7 +6,7 @@ contact:
   label: Mary Shimoyama
 license:
   url: http://creativecommons.org/publicdomain/zero/1.0/
-  label: CC-0
+  label: CC0 1.0
 description: Morphological and physiological measurement records generated from clinical and model organism research and health programs.
 domain: clinical
 homepage: http://rgd.mcw.edu/rgdweb/ontology/search.html

diff --git a/ontology/cob.md b/ontology/cob.md
@@ -13,7 +13,7 @@ products:
   - id: cob.owl
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0
+  label: CC0 1.0
 title: Core Ontology for Biology and Biomedicine
 activity_status: active
 repository: https://github.com/OBOFoundry/COB

diff --git a/ontology/cro.md b/ontology/cro.md
@@ -12,7 +12,7 @@ contact:
   github: marijane
 license:
   url: https://creativecommons.org/licenses/by/2.0/
-  label: CC-BY
+  label: CC BY 2.0
 build:
   checkout: git clone https://github.com/data2health/contributor-role-ontology.git
   system: git

diff --git a/ontology/cteno.md b/ontology/cteno.md
@@ -28,7 +28,7 @@ taxon:
 tracker: https://github.com/obophenotype/ctenophore-ontology/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/obophenotype/ctenophore-ontology
 preferredPrefix: CTENO

diff --git a/ontology/cto.md b/ontology/cto.md
@@ -13,7 +13,7 @@ products:
   - id: cto.owl
 license:
   url: http://creativecommons.org/licenses/by/4.0/
-  label: CC-BY
+  label: CC BY 4.0
 activity_status: active
 repository: https://github.com/ClinicalTrialOntology/CTO
 preferredPrefix: CTO

diff --git a/ontology/ddanat.md b/ontology/ddanat.md
@@ -11,7 +11,7 @@ homepage: http://dictybase.org/
 twitter: dictybase
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0 1.0 Universal
+  label: CC0 1.0
 products:
   - id: ddanat.owl
   - id: ddanat.obo

diff --git a/ontology/ddpheno.md b/ontology/ddpheno.md
@@ -7,7 +7,7 @@ contact:
   github: pfey03
 license:
   url: http://creativecommons.org/publicdomain/zero/1.0/
-  label: CC-0
+  label: CC0 1.0
 description: A structured controlled vocabulary of phenotypes of the slime-mould <i>Dictyostelium discoideum</i>.
 domain: anatomy
 homepage: http://dictybase.org/

diff --git a/ontology/dideo.md b/ontology/dideo.md
@@ -9,7 +9,7 @@ contact:
   github: mbrochhausen
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 homepage: https://github.com/DIDEO/DIDEO
 tracker: https://github.com/DIDEO/DIDEO/issues
 products:

diff --git a/ontology/dinto.md b/ontology/dinto.md
@@ -13,7 +13,7 @@ domain: health
 tracker: https://github.com/labda/DINTO/issues
 license:
   url: https://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 publications:
   - id: http://pubs.acs.org/doi/10.1021/acs.jcim.5b00119
     title: "DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug–Drug Interactions and Their Mechanisms."

diff --git a/ontology/doid.md b/ontology/doid.md
@@ -41,7 +41,7 @@ publications:
     title: "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data"
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0 1.0 Universal
+  label: CC0 1.0
 usages:
   - user: https://www.alliancegenome.org
     description: Alliance of Genome Resources - MGD, RGD, SGD, FlyBase, WormBase, ZFIN use DO

diff --git a/ontology/dpo.md b/ontology/dpo.md
@@ -18,7 +18,7 @@ taxon:
 title: Drosophila Phenotype Ontology
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 build:
   checkout: git clone https://github.com/FlyBase/drosophila-phenotype-ontolog.git
   system: git

diff --git a/ontology/dron.md b/ontology/dron.md
@@ -16,7 +16,7 @@ build:
 tracker: https://github.com/ufbmi/dron/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/ufbmi/dron/
 preferredPrefix: DRON

diff --git a/ontology/duo.md b/ontology/duo.md
@@ -23,7 +23,7 @@ dependencies:
 tracker: https://github.com/EBISPOT/DUO/issues
 license:
   url: http://creativecommons.org/licenses/by/4.0/
-  label: CC-BY
+  label: CC BY 4.0
 activity_status: active
 repository: https://github.com/EBISPOT/DUO
 preferredPrefix: DUO

diff --git a/ontology/ecao.md b/ontology/ecao.md
@@ -23,7 +23,7 @@ dependencies:
 tracker: https://github.com/echinoderm-ontology/ecao_ontology/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/echinoderm-ontology/ecao_ontology
 preferredPrefix: ECAO

diff --git a/ontology/eco.md b/ontology/eco.md
@@ -28,7 +28,7 @@ publications:
     title: "Standardized description of scientific evidence using the Evidence Ontology (ECO)"
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0 1.0 Universal
+  label: CC0 1.0
 funded_by:
   - "http://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400"
 usages:

diff --git a/ontology/ecocore.md b/ontology/ecocore.md
@@ -33,7 +33,7 @@ dependencies:
 tracker: https://github.com/EcologicalSemantics/ecocore/issues
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 activity_status: active
 repository: https://github.com/EcologicalSemantics/ecocore
 preferredPrefix: ECOCORE

diff --git a/ontology/ecto.md b/ontology/ecto.md
@@ -48,7 +48,7 @@ dependencies:
 tracker: https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues
 license:
   url: https://creativecommons.org/publicdomain/zero/1.0/
-  label: CC0
+  label: CC0 1.0
 activity_status: active
 repository: https://github.com/EnvironmentOntology/environmental-exposure-ontology
 preferredPrefix: ECTO

diff --git a/ontology/ehdaa2.md b/ontology/ehdaa2.md
@@ -6,7 +6,7 @@ contact:
   label: Jonathan Bard
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 description: A structured controlled vocabulary of stage-specific anatomical structures of the developing human.
 tracker: https://github.com/obophenotype/human-developmental-anatomy-ontology/issues
 domain: anatomy

diff --git a/ontology/emapa.md b/ontology/emapa.md
@@ -7,7 +7,7 @@ contact:
   github: tfhayamizu
 license:
   url: https://creativecommons.org/licenses/by/4.0/
-  label: CC-BY 4.0
+  label: CC BY 4.0
 description: "An ontology for mouse anatomy covering embryonic development and postnatal stages."
 domain: anatomy
 homepage: http://www.informatics.jax.org/expression.shtml

diff --git a/ontology/envo.md b/ontology/envo.md
@@ -11,7 +11,7 @@ homepage: http://environmentontology.org/
 page: https://github.com/EnvironmentOntology/envo
 license:
   url: http://creativecommons.org/licenses/by/3.0/
-  label: CC-BY
+  label: CC BY 3.0
 publications:
   - id: http://www.dx.doi.org/10.1186/2041-1480-4-43
     title: "The environment ontology: contextualising biological and biomedical entities"