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R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.

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rascal

rascal (relative to absolute copy number scaling) is a Shiny web application and R package containing functions for scaling relative copy number data from shallow whole genome sequencing of cancer samples to absolute values and estimating the tumour ploidy and cellularity of the samples.

Installation and usage

Please see the wiki pages for details on installing and using the Shiny app and underlying functions within the R package.

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R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.

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  • R 96.6%
  • Dockerfile 1.7%
  • Other 1.7%