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updated dm_reader

updated dm_reader #386

Workflow file for this run

name: build
env:
PYTHON_MAIN_VERSION: 3.9
on:
pull_request:
branches:
- '*'
push:
branches:
- '*'
tags:
- '*'
jobs:
build-linux:
runs-on: ubuntu-latest
strategy:
max-parallel: 5
matrix:
python-version: ["3.10", "3.9", "3.8"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get update -qq
python -m pip install --upgrade pip
python -m pip install flake8
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: install package
run: |
pip install .
pip list
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --ignore=F821
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --ignore=F821
- name: Generate coverage report
run: |
pip install pytest pytest-cov pywget
pytest --cov=./ --cov-report=xml
pip install -r extras_require.txt
pytest --cov=./ --cov-report=xml
- name: Upload coverage to Codecov
if: ${{ matrix.python-version == env.PYTHON_MAIN_VERSION }}
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: ./coverage.xml
# directory: ./coverage/reports/
flags: unittests
env_vars: OS,PYTHON
name: codecov-umbrella
fail_ci_if_error: true
# path_to_write_report: ./coverage/codecov_report.txt
verbose: true
- name: Documentation build
if: ${{ matrix.python-version == env.PYTHON_MAIN_VERSION && github.ref == 'refs/heads/master'}}
run: |
pip install sphinx>=3.1.1 sphinx-gallery sphinx-rtd-theme>=0.5.0 sphinx-autodoc-typehints numpydoc wget nbsphinx
sudo apt-get install pandoc
sphinx-build -b html -aET docs/source docs/_build/html
touch docs/_build/html/.nojekyll
- name: Deploy to GitHub Pages
if: ${{ matrix.python-version == env.PYTHON_MAIN_VERSION && github.ref == 'refs/heads/master'}}
uses: crazy-max/ghaction-github-pages@v2
with:
target_branch: gh-pages
build_dir: docs/_build/html
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Upload to PyPi
if: startsWith( github.ref, 'refs/tags') && matrix.python-version == env.PYTHON_MAIN_VERSION
env:
PYPI_TOKEN_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
run: |
pip install wheel twine
python setup.py sdist bdist_wheel
twine upload --username "__token__" --password $PYPI_TOKEN_PASSWORD dist/*