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Update Ubuntu script to match version restrictions of current PyNE #65

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Update Ubuntu script to match version restrictions of current PyNE #65

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d0f7c31
Update Ubuntu script to match version restrictions of current PyNE
gonuke Feb 17, 2022
8d901e2
Update ubuntu.sh
gonuke May 18, 2022
3dfd982
minor upates
gonuke Mar 18, 2023
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40 changes: 29 additions & 11 deletions ubuntu.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,28 +2,44 @@
# list of package installed through apt-get
# (required to run this scripts and/or as dependancies for PyNE and its depedancies)
apt_package_list="software-properties-common \
python3-pip \
wget \
g++ \
build-essential \
python3-setuptools \
python3-pip \
python3-dev \
python3-packaging \
libpython3-dev \
git \
cmake \
gfortran \
libblas-dev \
liblapack-dev \
libeigen3-dev \
libhdf5-dev \
libhdf5-serial-dev \
autoconf \
libtool \
doxygen \
hdf5-tools"

# list of python package required for PyNE and its depedencies (installed using pip3 python package manager)
pip_package_list="numpy \
scipy \
cython \
nose \
tables \
matplotlib \
jinja2 \
setuptools \
future"
pip_package_list_a='sphinx \
cloud_sptheme \
prettytable \
"setuptools<49" \
sphinxcontrib_bibtex \
numpydoc \
nbconvert \
numpy \
nose \
cython \
future \
"tables<3.7" \
scipy \
jinja2 \
progress'
pip_package_list_b='matplotlib'

# hdf5 std directory
hdf5_libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial
Expand All @@ -45,7 +61,9 @@ function check_repo() {
# system update
sudo apt-get -y update
sudo apt-get install -y ${apt_package_list}
pip3 install --user ${pip_package_list}
pip3 install --upgrade pip
pip3 install --force-reinstall --user ${pip_package_list_a}
pip3 install ${pip_pacakge_list_b}

install_dir=${HOME}/opt
mkdir -p ${install_dir}
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5 changes: 3 additions & 2 deletions ubuntu_20.04-dev.dockerfile
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Expand Up @@ -39,7 +39,8 @@ RUN pip install --user numpy \
matplotlib \
jinja2 \
setuptools \
future
future \
progress

# make working directory
WORKDIR $HOME/opt
Expand Down Expand Up @@ -94,7 +95,7 @@ RUN git clone https://github.com/pyne/pyne.git \
&& python setup.py install --user \
--moab $HOME/opt/moab \
--dagmc $HOME/opt/dagmc \
--clean
--clean --slow

RUN echo "export PATH=$HOME/.local/bin:\$PATH" >> ~/.bashrc \
&& echo "export LD_LIBRARY_PATH=$HOME/.local/lib:\$LD_LIBRARY_PATH" >> ~/.bashrc \
Expand Down