Bump cython, fixes for tests, and fixes for deprecation warnings #332
Workflow file for this run
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| name: Tests | |
| on: | |
| pull_request: | |
| schedule: | |
| # Run test at 0400 UTC on Saturday. | |
| - cron: '0 4 * * 6' | |
| # Run test at 0400 UTC on day 1 of the month to create auto-generated | |
| # code afresh and cache it. | |
| - cron: '0 4 1 * *' # Ref https://crontab.guru/#0_4_1_*_* | |
| jobs: | |
| tests: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: [3.11] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| - name: Install dependencies on Linux/MacOS | |
| run: | | |
| conda info | |
| conda install -c conda-forge pocl pyopencl | |
| python -c 'import pyopencl as cl' | |
| if: ${{ runner.os != 'Windows' }} | |
| - name: Setup compyle config on MacOS to use openmp enabled clang from homebrew | |
| run: | | |
| brew install libomp | |
| mkdir -p ~/.compyle | |
| touch ~/.compyle/config.py | |
| echo "import os" >> ~/.compyle/config.py | |
| echo "os.environ['CC'] = '$(brew --prefix llvm@15)/bin/clang'" >> ~/.compyle/config.py | |
| echo "os.environ['CXX'] = '$(brew --prefix llvm@15)/bin/clang++'" >> ~/.compyle/config.py | |
| export CPPFLAGS="-I$(brew --prefix libomp)/include -I$(brew --prefix llvm@15)/include -Xclang -fopenmp" | |
| export LDFLAGS="-L$(brew --prefix libomp)/lib -L$(brew --prefix llvm@15)/lib -lomp" | |
| python -c "import os; OMP_CFLAGS=os.environ.get('CPPFLAGS').split(' '); print(f'{OMP_CFLAGS=}')" >> ~/.compyle/config.py | |
| python -c "import os; OMP_LINK=os.environ.get('LDFLAGS').split(' '); print(f'{OMP_LINK=}')" >> ~/.compyle/config.py | |
| cat ~/.compyle/config.py | |
| if: ${{ runner.os == 'macOS' }} | |
| - name: Install dependencies | |
| run: | | |
| conda info | |
| conda install -c conda-forge numpy cython h5py | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install https://github.com/pypr/cyarray/zipball/master | |
| python -m pip install https://github.com/pypr/compyle/zipball/master | |
| python -m pip install -r requirements.txt -r requirements-test.txt | |
| python setup.py develop | |
| python -m pip list | |
| # Cache auto-generated code. Cache key changes every month. | |
| # Thanks https://stackoverflow.com/a/60942437 | |
| - name: Get month to use as cache key. | |
| id: month | |
| run: echo "month==$(date +'%m')" >> $GITHUB_OUTPUT | |
| - name: Deal with auto-generated code cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.pysph | |
| ~/.compyle | |
| key: ${{ runner.os }}-${{ steps.month.outputs.month }} | |
| - name: Run tests | |
| run: | | |
| python -m pytest -v -m 'not slow or slow' |