Update fig 4.

pyranges · Jun 21, 2024 · 51174aa · 51174aa
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commit 51174aa
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Showing 3 changed files with 1 addition and 9 deletions.
diff --git a/examples/fig_4.png b/examples/fig_4.png
diff --git a/examples/pr_fig_4.py b/examples/pr_fig_4.py
@@ -11,4 +11,4 @@
 
 p_cds = p[p["Feature"] == "CDS"]
 
-prp.plot(p_cds, id_col="gene_name", text=False, legend=True, to_file="fig_4.png")
+prp.plot(p_cds, id_col="gene_name", text=False, legend=True, to_file=("fig_4.png", (600,500)), arrow_size=0.05)
diff --git a/examples/time_test.py b/examples/time_test.py
@@ -24,14 +24,6 @@
 d_cds = d[d["Feature"] == feat]
 
 # Check number of genes in each chrom
-# d_cds.groupby("Chromosome").apply(
-#     lambda x: print(
-#         "CHROM:"
-#         + str(x["Chromosome"].iloc[0])
-#         + ":   "
-#         + str(len(x.groupby("gene_id")))
-#     )
-# )
 
 # Chromosome subset
 d_cds_chrom = d_cds[d_cds["Chromosome"] == chrom]