Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows #9
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| name: Install, test, doctest, lint, typecheck pyrle | |
| # Source: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#using-multiple-python-versions | |
| on: [pull_request, workflow_dispatch] | |
| jobs: | |
| install_and_test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # You can use PyPy versions in python-version. | |
| # For example, pypy2.7 and pypy3.9 | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: pip install -e . | |
| - run: | |
| pip install pytest pyranges | |
| - name: Test | |
| run: | | |
| cd tests | |
| python -c "import pyranges; print(pyranges.data.aorta().to_rle())" | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - run: pip install isort | |
| - run: isort --profile black -l 120 --check --diff pyrle | |
| black: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11.0" | |
| - run: pip install black | |
| - run: black -l 120 --check --diff pyrle | |
| flake8: | |
| runs-on: ubuntu-latest | |
| name: Lint | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| - name: flake8 Lint install | |
| run: pip install flake8 | |
| - name: flake8 Lint | |
| run: flake8 --max-line-length=120 --ignore E203,E501,W503 pyrle | |
| mypy: | |
| runs-on: ubuntu-latest | |
| name: Mypy | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install mypy | |
| run: pip install mypy | |
| - name: mypy | |
| run: | | |
| pip install numpy # for the typing stubs | |
| python -m pip install pandas-stubs types-setuptools types-tabulate | |
| mypy pyrle |