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Add pairwise correlation plot to sir.py #2463

Merged
merged 2 commits into from
May 7, 2020
Merged

Add pairwise correlation plot to sir.py #2463

merged 2 commits into from
May 7, 2020

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@fritzo fritzo commented May 5, 2020 •
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Addresses #2426

This PR:

  1. Adds a pairwise correlation plot to examples/contrib/epidemiology/sir.py
  2. Changes the rho prior from Uniform(0,1) to Beta(2,2) to avoid unreasonably hight initial estimates of rho by SMC; this fixes a regression in quality introduced in Use SMC to initialize compartmental models #2452

Example

python examples/contrib/epidemiology/sir.py -p=10000 -d=64 -n=400 -m=100 --plot

image

@fritzo fritzo added the easy label May 5, 2020
@martinjankowiak martinjankowiak merged commit 8633b71 into dev May 7, 2020
@fritzo fritzo deleted the sir-corr-plot branch July 14, 2020 01:24
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@martinjankowiak martinjankowiak martinjankowiak approved these changes

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