Add initialization strategy that randomly samples values

pyro/contrib/epidemiology/compartmental.py

@@ -17,7 +17,7 @@
 import pyro.poutine as poutine
 from pyro.distributions.transforms import DiscreteCosineTransform
 from pyro.infer import MCMC, NUTS, SMCFilter, infer_discrete
-from pyro.infer.autoguide import init_to_value
+from pyro.infer.autoguide import init_to_generated, init_to_value
 from pyro.infer.reparam import DiscreteCosineReparam
 from pyro.util import warn_if_nan
 
@@ -298,19 +298,24 @@ def fit(self, **options):
             raise NotImplementedError("regional models do not support DiscreteCosineReparam")
 
         # Heuristically initialze to feasible latents.
-        logger.info("Heuristically initializing...")
         heuristic_options = {k.replace("heuristic_", ""): options.pop(k)
-                             for k in list(options) if k.startswith("heuristic_")}
-        init_values = self.heuristic(**heuristic_options)
-        assert isinstance(init_values, dict)
-        assert "auxiliary" in init_values, \
-            ".heuristic() did not define auxiliary value"
-        if self._dct is not None:
-            # Also initialize DCT transformed coordinates.
-            x = init_values["auxiliary"]
-            x = biject_to(constraints.interval(-0.5, self.population + 0.5)).inv(x)
-            x = DiscreteCosineTransform(smooth=self._dct)(x)
-            init_values["auxiliary_dct"] = x
+                             for k in list(options)
+                             if k.startswith("heuristic_")}
+
+        def heuristic():
+            logger.info("Heuristically initializing...")
+            with poutine.block():
+                init_values = self.heuristic(**heuristic_options)
+            assert isinstance(init_values, dict)
+            assert "auxiliary" in init_values, \
+                ".heuristic() did not define auxiliary value"
+            if self._dct is not None:
+                # Also initialize DCT transformed coordinates.
+                x = init_values["auxiliary"]
+                x = biject_to(constraints.interval(-0.5, self.population + 0.5)).inv(x)
+                x = DiscreteCosineTransform(smooth=self._dct)(x)
+                init_values["auxiliary_dct"] = x
+            return init_to_value(values=init_values)
 
         # Configure a kernel.
         logger.info("Running inference...")
@@ -322,7 +327,7 @@ def fit(self, **options):
             model = poutine.reparam(model, {"auxiliary": rep})
         kernel = NUTS(model,
                       full_mass=full_mass,
-                      init_strategy=init_to_value(values=init_values),
+                      init_strategy=init_to_generated(generate=heuristic),
                       max_tree_depth=max_tree_depth)
 
         # Run mcmc.

pyro/infer/autoguide/__init__.py

@@ -5,10 +5,9 @@
                                          AutoDiscreteParallel, AutoGuide, AutoGuideList, AutoIAFNormal,
                                          AutoLaplaceApproximation, AutoLowRankMultivariateNormal,
                                          AutoMultivariateNormal, AutoNormal, AutoNormalizingFlow)
-from pyro.infer.autoguide.utils import mean_field_entropy
-from pyro.infer.autoguide.initialization import (init_to_feasible, init_to_mean, init_to_median,
+from pyro.infer.autoguide.initialization import (init_to_feasible, init_to_generated, init_to_mean, init_to_median,
                                                  init_to_sample, init_to_uniform, init_to_value)
-
+from pyro.infer.autoguide.utils import mean_field_entropy
 
 __all__ = [
     'AutoCallable',
@@ -25,6 +24,7 @@
     'AutoNormal',
     'AutoNormalizingFlow',
     'init_to_feasible',
+    'init_to_generated',
     'init_to_mean',
     'init_to_median',
     'init_to_sample',

pyro/infer/autoguide/initialization.py

@@ -100,7 +100,8 @@ def init_to_mean(site=None):
 
 def init_to_uniform(site=None, radius=2):
     """
-    Initialize to a random point in the area `(-radius, radius)` of unconstrained domain.
+    Initialize to a random point in the area ``(-radius, radius)`` of
+    unconstrained domain.
 
     :param float radius: specifies the range to draw an initial point in the unconstrained domain.
     """
@@ -114,8 +115,8 @@ def init_to_uniform(site=None, radius=2):
 
 def init_to_value(site=None, values={}):
     """
-    Initialize to the value specified in `values`. We defer to
-    :func:`init_to_uniform` strategy for sites which do not appear in `values`.
+    Initialize to the value specified in ``values``. We defer to
+    :func:`init_to_uniform` strategy for sites which do not appear in ``values``.
 
     :param dict values: dictionary of initial values keyed by site name.
     """
@@ -128,6 +129,34 @@ def init_to_value(site=None, values={}):
         return init_to_uniform(site)
 
 
+class _InitToGenerated:
+    def __init__(self, generate):
+        self.generate = generate
+        self._init = None
+        self._seen = set()
+
+    def __call__(self, site):
+        if self._init is None or site["name"] in self._seen:
+            self._init = self.generate()
+            self._seen = {site["name"]}
+        return self._init(site)
+
+
+def init_to_generated(site=None, generate=lambda: init_to_uniform):
+    """
+    Initialize to the value specified in the ``values`` dict returned by
+    ``values_fn``. This is similar to ``init_to_value(values=values_fn())`` but
+    calls ``values_fn`` once per model execution, thereby permitting multiple
+    randomized initializations.
+
+    :param callable generate: A callable returning another initialization
+        function, e.g. returning an ``init_to_value(values={...})`` populated
+        with a dictionary of random samples.
+    """
+    init = _InitToGenerated(generate)
+    return init if site is None else init(site)
+
+
 class InitMessenger(Messenger):
     """
     Initializes a site by replacing ``.sample()`` calls with values

tests/infer/mcmc/test_mcmc_util.py

@@ -9,8 +9,8 @@
 import pyro
 import pyro.distributions as dist
 from pyro.infer import Predictive
-from pyro.infer.autoguide import (init_to_feasible, init_to_mean, init_to_median,
-                                  init_to_sample, init_to_uniform, init_to_value)
+from pyro.infer.autoguide import (init_to_feasible, init_to_generated, init_to_mean, init_to_median, init_to_sample,
+                                  init_to_uniform, init_to_value)
 from pyro.infer.mcmc import NUTS
 from pyro.infer.mcmc.api import MCMC
 from pyro.infer.mcmc.util import initialize_model
@@ -114,7 +114,9 @@ def model():
     init_to_sample(),
     init_to_uniform(radius=0.1),
     init_to_value(values={"x": torch.tensor(3.)}),
-])
+    init_to_generated(
+        generate=lambda: init_to_value(values={"x": torch.randn(())})),
+], ids=str)
 def test_init_strategy_smoke(init_strategy):
     def model():
         pyro.sample("x", dist.LogNormal(0, 1))

tests/infer/test_initialization.py

@@ -0,0 +1,34 @@
+# Copyright Contributors to the Pyro project.
+# SPDX-License-Identifier: Apache-2.0
+
+import torch
+
+import pyro
+import pyro.distributions as dist
+from pyro.infer.autoguide.initialization import InitMessenger, init_to_generated, init_to_value
+
+
+def test_init_to_generated():
+    def model():
+        x = pyro.sample("x", dist.Normal(0, 1))
+        y = pyro.sample("y", dist.Normal(0, 1))
+        z = pyro.sample("z", dist.Normal(0, 1))
+        return x, y, z
+
+    class MockGenerate:
+        def __init__(self):
+            self.counter = 0
+
+        def __call__(self):
+            values = {"x": torch.tensor(self.counter + 0.0),
+                      "y": torch.tensor(self.counter + 0.5)}
+            self.counter += 1
+            return init_to_value(values=values)
+
+    mock_generate = MockGenerate()
+    with InitMessenger(init_to_generated(generate=mock_generate)):
+        for i in range(5):
+            x, y, z = model()
+            assert x == i
+            assert y == i + 0.5
+    assert mock_generate.counter == 5