Add pysam/libcbgzf.pxd to declare BGZFile

All the other pysam/*.pyx files have a corresponding *.pxd file containing declarations, but this one was previously missing.
pysam-developers · Oct 5, 2024 · 4bde386 · 4bde386
1 parent 6147f5d
commit 4bde386
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/pysam/libcbgzf.pxd b/pysam/libcbgzf.pxd
@@ -0,0 +1,7 @@
+# cython: language_level=3
+
+from pysam.libchtslib cimport BGZF
+
+cdef class BGZFile(object):
+    cdef BGZF *bgzf
+    cdef readonly object name, index
diff --git a/pysam/libcbgzf.pyx b/pysam/libcbgzf.pyx
@@ -34,9 +34,6 @@ cdef class BGZFile(object):
     This class only supports opening files in binary mode. If you need to open a
     compressed file in text mode, use the gzip.open() function.
     """
-    cdef BGZF* bgzf
-    cdef readonly object name, index
-
     def __init__(self, filename, mode=None, index=None):
         """Constructor for the BGZFile class.