Get raw gene count tables from either Salmon and RSEM analysis #1135

Job	Run time
Run pipeline with test data (23.04.0)	3m 31s
Test workflow parameters (test)	4m 3s
Run pipeline with test data (latest-everything)	3m 36s
Test workflow parameters (test_full)	4m 38s
Test workflow parameters (test_contrast_matrix)	2m 40s
Test workflow parameters (test_contrast_list)	2m 54s
Test workflow parameters (test_no_multiqc)	2m 45s
Test workflow parameters (test_relevel)	2m 41s
Test workflow parameters (test_smrnaseq)	2m 45s
Test workflow parameters (test_star_rsem)	20m 57s
Test workflow parameters (test_star_salmon)	4m 38s
Test workflow parameters (test_use_vst)	2m 30s
Test workflow parameters (test_batcheffect)	3m 5s
Test workflow parameters (test_custom_gmt)	3m 36s
	1h 4m 19s

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