Add missing params to usage docs #1140

Job	Run time
Run pipeline with test data (23.04.0)	1m 12s
Run pipeline with test data (latest-everything)	56s
Test workflow parameters (test)	3m 47s
Test workflow parameters (test_full)	4m 31s
Test workflow parameters (test_contrast_matrix)	2m 42s
Test workflow parameters (test_contrast_list)	2m 42s
Test workflow parameters (test_no_multiqc)	2m 37s
Test workflow parameters (test_relevel)	2m 32s
Test workflow parameters (test_smrnaseq)	2m 33s
Test workflow parameters (test_star_rsem)	20m 30s
Test workflow parameters (test_star_salmon)	4m 31s
Test workflow parameters (test_use_vst)	2m 23s
Test workflow parameters (test_batcheffect)	2m 50s
Test workflow parameters (test_custom_gmt)	3m 21s
	57m 7s

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